ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 24.01 Longest contig: 255.34 Kbp Bin length: 53.74 Mbp GC content: 62.24 %

Contigs count: 17166 Features count: 68256 rRNAs count: 6 tRNAs count: 714

Genome completeness

megabin RP 51 / 55 MC: 48 BSCG 45 / 51 MC: 39 ASCG 38 / 38 MC: 38

Displaying items 16701-16750 of 17166 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
qs_9_scaffold_12430 Species: Halogeometricum pallidum (50%)	2	1651 bp	69.65	9.39	100.12
qs_9_scaffold_12450 Species: Haloterrigena salina (100%)	2	1648 bp	50.55	4.43	100.12
qs_9_scaffold_13081 Species: Halococcus thailandensis (100%)	2	1576 bp	58.82	7.99	100.13
qs_9_scaffold_13359 Species: Haloferax volcanii (50%)	2	1546 bp	60.54	7.31	100.13
qs_9_scaffold_13704 Species: Candidatus Nanosalina sp. J07AB43 (50%)	2	1507 bp	47.64	8.43	100.13
qs_9_scaffold_26117 Phylum: Parcubacteria (66.67%)	3	1477 bp	54.43	4.40	100.13
qs_9_scaffold_14175 Species: Natronomonas moolapensis (50%)	2	1456 bp	68.20	9.20	100.14
qs_9_scaffold_14350 Species: Halomicrobium mukohataei (100%)	2	1438 bp	63.21	9.81	100.14
qs_9_scaffold_14526 Species: Halogeometricum pallidum (50%)	2	1420 bp	72.25	161.34	100.14
qs_9_scaffold_9467 Species: Natronomonas moolapensis (50%)	2	2115 bp	69.98	18.30	100.14
qs_9_scaffold_22439 Species: Natronomonas moolapensis (50%)	2	1402 bp	72.47	31.24	100.14
qs_9_scaffold_14995 Species: Salinibacter ruber (50%)	2	1378 bp	62.26	40.93	100.15
qs_9_scaffold_15194 Species: Halomicrobium mukohataei (100%)	2	1363 bp	65.96	10.05	100.15
qs_9_scaffold_15263 Species: Halococcus saccharolyticus (50%)	2	1357 bp	69.12	8.11	100.15
qs_9_scaffold_12186 Species: Halonotius sp. J07HN6 (50%)	2	2711 bp	60.42	6.86	100.15
qs_9_scaffold_9958 Species: Haloarcula japonica (50%)	2	2022 bp	67.85	17.46	100.15
qs_9_scaffold_15393 Species: Halogranum salarium (50%)	2	1345 bp	63.64	9.44	100.15
qs_9_scaffold_15397 Species: Halococcus thailandensis (100%)	2	1345 bp	64.24	6.47	100.15
qs_9_scaffold_3208 Order: Haloferacales (60%)	5	5377 bp	64.57	10.17	100.15
qs_9_scaffold_15722 Species: halophilic archaeon DL31 (100%)	2	1318 bp	63.35	5.92	100.15
qs_9_scaffold_15797	3	1312 bp	66.08	6.71	100.15
qs_9_scaffold_15823 Species: Halomicrobium mukohataei (50%)	2	1309 bp	68.22	11.99	100.15
qs_9_scaffold_10398 Species: Halorubrum saccharovorum (50%)	2	1947 bp	74.68	31.84	100.15
qs_9_scaffold_15977 Species: Halococcus thailandensis (50%)	2	1297 bp	71.55	59.83	100.15
qs_9_scaffold_7536 Species: Halorubrum coriense (100%)	2	2579 bp	61.15	20.55	100.16
qs_9_scaffold_16211 Species: Halomicrobium mukohataei (100%)	2	1279 bp	64.50	7.82	100.16
qs_9_scaffold_16212 Species: Haloarcula japonica (50%)	2	1279 bp	67.94	12.98	100.16
qs_9_scaffold_16252 Species: Halococcus salifodinae (100%)	2	1276 bp	70.06	38.64	100.16
qs_9_scaffold_16257 Species: Haloarcula marismortui (50%)	2	1276 bp	53.84	5.88	100.16
qs_9_scaffold_16366 Species: Natronomonas pharaonis (50%)	2	1267 bp	71.11	17.28	100.16
qs_9_scaffold_16468 Species: Halococcus thailandensis (100%)	2	1261 bp	65.66	46.31	100.16
qs_9_scaffold_16574 Species: Haladaptatus paucihalophilus (50%)	2	1252 bp	66.13	8.39	100.16
qs_9_scaffold_7817	5	2501 bp	66.25	8.68	100.16
qs_9_scaffold_15545 Species: Natronococcus amylolyticus (100%)	2	2483 bp	66.73	38.06	100.16
qs_9_scaffold_16894 Species: Salinibacter ruber (100%)	2	1228 bp	64.09	11.89	100.16
qs_9_scaffold_17077 Species: Natronomonas pharaonis (50%)	2	1216 bp	69.16	10.44	100.16
qs_9_scaffold_29261 Genus: Halorubrum (100%)	3	1213 bp	57.79	12.20	100.16
qs_9_scaffold_17188 Species: Halococcus saccharolyticus (50%)	2	1207 bp	68.60	32.06	100.17
qs_9_scaffold_17189 Species: Natronococcus jeotgali (50%)	2	1207 bp	71.75	13.59	100.17
qs_9_scaffold_17193 Species: Halococcus saccharolyticus (50%)	2	1207 bp	70.01	58.41	100.17
qs_9_scaffold_8329 Species: Natronomonas pharaonis (66.67%)	3	2372 bp	72.05	21.54	100.17
qs_9_scaffold_17625 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated (50%)	2	1177 bp	65.34	9.09	100.17
qs_9_scaffold_17675 Species: Salinibacter ruber (100%)	2	1174 bp	65.93	28.53	100.17
qs_9_scaffold_18173 Species: Halovivax asiaticus (100%)	2	1144 bp	67.92	9.88	100.18
qs_9_scaffold_29374 Species: Salinibacter ruber (100%)	2	1138 bp	67.40	10.72	100.18
qs_9_scaffold_18394 Species: Halorubrum coriense (50%)	2	1129 bp	71.74	24.09	100.18
qs_9_scaffold_18460 Species: uncultured archaeon A07HR67 (50%)	2	1126 bp	57.55	6.31	100.18
qs_9_scaffold_12254 Species: Haladaptatus paucihalophilus (66.67%)	3	1674 bp	63.86	9.38	100.18
qs_9_scaffold_14363 Species: Halococcus thailandensis (50%)	2	2231 bp	68.98	28.82	100.18
qs_9_scaffold_18647 Species: Natrinema altunense (100%)	2	1114 bp	45.24	4.13	100.18

Displaying items 16701-16750 of 17166 in total

QS_9_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

QS_9_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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