ggKbase home page

qs_9_scaffold_8939_1

Organism: QS_9_Halosimplex_carlsbadense_67_15

near complete RP 33 / 55 MC: 3 BSCG 29 / 51 MC: 1 ASCG 32 / 38 MC: 1
Location: 2..1051

Top 3 Functional Annotations

Value Algorithm Source
Nonsense mediated mRNA decay protein n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0D0L8_9EURY similarity UNIREF
DB: UNIREF100
  • Identity: 86.8
  • Coverage: 349.0
  • Bit_score: 618
  • Evalue 4.50e-174
Nonsense mediated mRNA decay protein {ECO:0000313|EMBL:ELZ28237.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex ca similarity UNIPROT
DB: UniProtKB
  • Identity: 86.8
  • Coverage: 349.0
  • Bit_score: 618
  • Evalue 6.30e-174
nonsense mediated mRNA decay-like protein similarity KEGG
DB: KEGG
  • Identity: 73.1
  • Coverage: 349.0
  • Bit_score: 534
  • Evalue 1.80e-149

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Halosimplex carlsbadense → Halosimplex → Halobacteriales → Halobacteria → Euryarchaeota → Archaea

Sequences

DNA sequence
Length: 1050
CGCGACCCCGACAGCGTGCTCTGTGACGGCTGTTACTTCGAGGAGTTCGACCTCGTCGACGCGCCCGAGCGCATCGACGTGCGCGTCTGTTCGCGGTGTGGCGCGGTCCACCGCGGGAACCGCTGGGTCGACGTCGGCGCGGAGGACTACACCGACATCGCCGTCGAGGAGGTCTCCGACGCGCTCGGCGTCCACCTCGACGCGACGGACGTGAGCTGGGAGGTCGCGCCGGAACAGCTCGACGAGAACAACATCCGGATGCACTGCCAGTTCTCGGGCGTCGTCCGCGGGACGCTCGTCTCCGAGGCGGTCGTCGTCCCGGTGAAGATCGCCCGCCAGACCTGCGACCGCTGTGGCCGGATCGCCGGTGGCTCCTACGCCGCGGTCGTACAGGTCCGCGCCGAGGAGCGAACGCCGACGCAAGCCGAACAGCAGCGCGCCCGGGAGACCGCGGAGGCCTACATCGCCGACCGCGAGGCGACGGGCGACCGCAACGCCTTCATCACGGAGGTCACCGAGGTCGACGAGGGGCTGAACATGAAGATCTCCACCAACCAGATGGGCCAGGGGATCGCAAAGCGGATCGTCGAGCAGTTAGGTGGAACCTACGAGGACTACGAGACGCTCGTCACCGAGGACAGCGACGGCAACGAGGTCTACCGCGTGACGTTCGCGGTCCGACTCCCGCGGTACCGCCCCGGCGAGGTGGTCGACCCCAAGGACGAGGGCGGGCCGGTCCTCGTCAGGAGCGTCCGCGGGAACCTCAAGGGCATCCGGTTACCGACCGGCGAACACTACGAGGCGAGCTTCGAGGACGGCGACGCACCGGAGGCGCGGCGGCTCGGGACCCGCGAGGACGCCCAGTCGACCACCGTCGTCGCCGTCGAAGACGAGAACGCCGTGCAGGTGCTCGACCCCGAGACGTACGAGGCCAAGACGGTCCCGCGGCCGGACTACTTCGACCCCGACGCCGAGGAGGTCCCCGTGATCAAGAGCCGCGCGGGCCTGCACGTGCTGCCGGACGACGGAGGCGACGAGCGGGATGACTGA
PROTEIN sequence
Length: 350
RDPDSVLCDGCYFEEFDLVDAPERIDVRVCSRCGAVHRGNRWVDVGAEDYTDIAVEEVSDALGVHLDATDVSWEVAPEQLDENNIRMHCQFSGVVRGTLVSEAVVVPVKIARQTCDRCGRIAGGSYAAVVQVRAEERTPTQAEQQRARETAEAYIADREATGDRNAFITEVTEVDEGLNMKISTNQMGQGIAKRIVEQLGGTYEDYETLVTEDSDGNEVYRVTFAVRLPRYRPGEVVDPKDEGGPVLVRSVRGNLKGIRLPTGEHYEASFEDGDAPEARRLGTREDAQSTTVVAVEDENAVQVLDPETYEAKTVPRPDYFDPDAEEVPVIKSRAGLHVLPDDGGDERDD*