ggKbase home page

RIFCSPHIGHO2_02_FULL_Archaea_Woesearchaeota_39_16

RIFCSPHIGHO2_02_FULL_unknown_39_16
In projects: RIFCSPHIGHO2_02_FULL  |  archaea-rifleo2  |  rifle_organic_carbon  |  rifle-organic-carbon-non-redundant  |  cpr-dpann-all  |  DPANN

Consensus taxonomy:

Taxonomy override: Woesearchaeota

Displaying items 1-50 of 74 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
rifcsphigho2_02_scaffold_3981 68 48408 bp 39.39 15.95 86.30
rifcsphigho2_02_scaffold_2408 51 47877 bp 38.86 15.70 83.31
rifcsphigho2_02_scaffold_2819
Domain: Archaea (60.61%)
33 25612 bp 39.35 16.46 84.31
rifcsphigho2_02_scaffold_3111
Domain: Archaea (56.25%)
32 32650 bp 40.32 16.35 87.63
rifcsphigho2_02_scaffold_6572
Domain: Archaea (82.76%)
29 15985 bp 41.53 15.41 92.67
rifcsphigho2_02_scaffold_16752
Domain: Archaea (62.07%)
29 22694 bp 37.77 16.13 83.56
rifcsphigho2_02_scaffold_8219
Domain: Bacteria (60%)
25 22627 bp 37.03 16.12 91.17
rifcsphigho2_02_scaffold_3124 25 26481 bp 40.69 15.86 83.24
rifcsphigho2_02_scaffold_13042 25 20438 bp 38.16 17.75 79.48
rifcsphigho2_02_scaffold_7451
Domain: Archaea (64%)
25 22238 bp 38.88 16.72 89.50
rifcsphigho2_02_scaffold_3112 24 23921 bp 40.06 16.69 83.68
rifcsphigho2_02_scaffold_7488
Domain: Archaea (62.5%)
24 17434 bp 38.83 16.36 78.31
rifcsphigho2_02_scaffold_6418 23 25179 bp 42.46 15.36 93.58
rifcsphigho2_02_scaffold_14041 22 16264 bp 38.27 15.51 78.78
rifcsphigho2_02_scaffold_3822
Domain: Archaea (50%)
22 21452 bp 35.85 16.22 81.66
rifcsphigho2_02_scaffold_2885
Domain: Bacteria (52.38%)
21 24815 bp 37.41 14.73 89.00
rifcsphigho2_02_scaffold_12822 20 14020 bp 39.01 16.31 86.11
rifcsphigho2_02_scaffold_4485
Species: AR9 (50%)
20 19724 bp 38.47 15.78 82.73
rifcsphigho2_02_scaffold_7960 19 14370 bp 39.16 18.62 90.60
rifcsphigho2_02_scaffold_25344 18 9686 bp 38.48 15.70 81.21
rifcsphigho2_02_scaffold_19656
Domain: Archaea (55.56%)
18 14261 bp 39.88 14.56 83.81
rifcsphigho2_02_scaffold_39995 18 11630 bp 37.03 19.20 83.19
rifcsphigho2_02_scaffold_5817
Domain: Archaea (55.56%)
18 17144 bp 40.15 16.12 86.50
rifcsphigho2_02_scaffold_41980 17 11400 bp 38.26 15.62 74.08
rifcsphigho2_02_scaffold_11449 17 16150 bp 41.09 16.49 90.74
rifcsphigho2_02_scaffold_10311 16 12384 bp 40.84 16.79 79.29
rifcsphigho2_02_scaffold_9705 15 12800 bp 37.41 15.08 77.48
rifcsphigho2_02_scaffold_24782
Domain: Archaea (53.33%)
15 10653 bp 40.33 18.49 89.95
rifcsphigho2_02_scaffold_31374 15 15704 bp 41.93 15.54 82.16
rifcsphigho2_02_scaffold_7964 15 14366 bp 41.28 19.22 88.12
rifcsphigho2_02_scaffold_26727
Domain: Archaea (50%)
14 11967 bp 37.12 18.20 78.64
rifcsphigho2_02_scaffold_24830 14 14267 bp 40.18 16.58 85.27
rifcsphigho2_02_scaffold_37013 14 11466 bp 38.92 17.39 78.13
rifcsphigho2_02_scaffold_14429
Domain: Bacteria (64.29%)
14 11083 bp 38.92 17.85 75.82
rifcsphigho2_02_scaffold_4468
Domain: Archaea (57.14%)
14 19759 bp 38.79 16.18 80.12
rifcsphigho2_02_scaffold_10276
Domain: Archaea (78.57%)
14 12404 bp 37.60 15.01 83.10
rifcsphigho2_02_scaffold_14786 14 9966 bp 37.14 18.41 79.50
rifcsphigho2_02_scaffold_11089 13 11842 bp 39.13 15.40 89.58
rifcsphigho2_02_scaffold_61874
Domain: Archaea (69.23%)
13 8238 bp 38.74 16.21 75.09
rifcsphigho2_02_scaffold_16849
Domain: Archaea (50%)
12 9925 bp 38.55 16.19 66.47
rifcsphigho2_02_scaffold_8042
Domain: Archaea (66.67%)
12 14278 bp 40.20 14.99 87.64
rifcsphigho2_02_scaffold_16414 12 12832 bp 39.13 15.15 77.06
rifcsphigho2_02_scaffold_38083
Domain: Archaea (63.64%)
11 10831 bp 38.22 15.39 86.56
rifcsphigho2_02_scaffold_36101
Domain: Archaea (54.55%)
11 10599 bp 39.60 16.35 79.56
rifcsphigho2_02_scaffold_41340 11 7154 bp 41.08 18.16 83.70
rifcsphigho2_02_scaffold_14487 11 14428 bp 41.08 15.39 86.87
rifcsphigho2_02_scaffold_103064 11 9215 bp 39.12 14.78 75.24
rifcsphigho2_02_scaffold_31540 11 8434 bp 40.27 15.03 88.89
rifcsphigho2_02_scaffold_23675
Domain: Bacteria (50%)
10 7464 bp 39.28 16.02 89.39
rifcsphigho2_02_scaffold_29724
Domain: Archaea (60%)
10 11159 bp 39.86 16.76 78.58
Displaying items 1-50 of 74 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.