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RIFCSPHIGHO2_12_FULL_Steel_Borg_32_12

RIFCSPHIGHO2_12_FULL_unknown_33_11
In projects: RIFCSPHIGHO2_12_FULL  |  Borg  |  BMp

Consensus taxonomy:

Description

Has only ~ 75% nt ID locally with Lilac (J)

Displaying 43 items
contig # features sequence size GC content (%) Cov Coding Density (%)
rifcsphigho2_12_scaffold_6570 52 22511 bp 30.37 10.65 74.54
rifcsphigho2_12_scaffold_1694 49 32475 bp 32.73 12.37 66.20
rifcsphigho2_12_scaffold_5972 47 32725 bp 33.37 10.88 71.75
rifcsphigho2_12_scaffold_1730 45 30807 bp 32.32 11.72 87.25
rifcsphigho2_12_scaffold_2486 43 25610 bp 33.99 11.48 85.88
rifcsphigho2_12_scaffold_3413 39 21065 bp 31.08 12.12 81.80
rifcsphigho2_12_scaffold_5564 39 20997 bp 32.77 11.22 84.55
rifcsphigho2_12_scaffold_8283 37 21876 bp 31.46 11.47 87.16
rifcsphigho2_12_scaffold_4625 36 17715 bp 30.38 12.05 81.85
rifcsphigho2_12_scaffold_6978 33 14014 bp 33.56 9.09 88.82
rifcsphigho2_12_scaffold_22731 33 17721 bp 32.94 9.83 84.78
rifcsphigho2_12_scaffold_1955 32 28832 bp 31.45 11.19 85.96
rifcsphigho2_12_scaffold_9144
Domain: Archaea (55.17%)
29 28582 bp 33.75 11.34 89.16
rifcsphigho2_12_scaffold_19154
Phylum: Euryarchaeota (55.56%)
27 19919 bp 32.23 10.21 81.78
rifcsphigho2_12_scaffold_34035 27 15284 bp 31.99 11.22 87.86
rifcsphigho2_12_scaffold_3320
Phylum: Euryarchaeota (55.56%)
27 21390 bp 32.56 12.32 79.59
rifcsphigho2_12_scaffold_5666 27 16648 bp 33.10 11.83 77.20
rifcsphigho2_12_scaffold_4829 26 17253 bp 33.65 12.63 83.20
rifcsphigho2_12_scaffold_12859 25 9754 bp 29.81 11.30 68.40
rifcsphigho2_12_scaffold_19029 24 15307 bp 32.84 11.45 81.45
rifcsphigho2_12_scaffold_3843 24 19723 bp 37.24 10.92 75.23
rifcsphigho2_12_scaffold_4339 23 18368 bp 31.55 10.50 90.24
rifcsphigho2_12_scaffold_12662 22 9845 bp 32.17 10.04 86.18
rifcsphigho2_12_scaffold_20124 17 7398 bp 34.27 7.75 76.03
rifcsphigho2_12_scaffold_11379 17 10479 bp 33.05 11.12 71.89
rifcsphigho2_12_scaffold_10789 17 11282 bp 30.70 12.36 80.62
rifcsphigho2_12_scaffold_11289
Order: Methanosarcinales (52.94%)
17 20900 bp 30.44 13.43 92.48
rifcsphigho2_12_scaffold_12183
Phylum: Euryarchaeota (53.33%)
15 10067 bp 34.95 11.68 81.68
rifcsphigho2_12_scaffold_19782 14 7478 bp 32.04 10.59 82.88
rifcsphigho2_12_scaffold_34211 14 9000 bp 30.57 10.65 75.83
rifcsphigho2_12_scaffold_6148 13 15042 bp 34.46 12.00 90.31
rifcsphigho2_12_scaffold_17256 13 8150 bp 32.15 11.52 78.55
rifcsphigho2_12_scaffold_27581 12 6071 bp 31.05 13.61 47.88
rifcsphigho2_12_scaffold_42342 12 8413 bp 31.28 9.93 91.29
rifcsphigho2_12_scaffold_22981 12 6816 bp 35.53 10.81 78.96
rifcsphigho2_12_scaffold_30054 11 7511 bp 33.50 11.04 63.43
rifcsphigho2_12_scaffold_9793 11 11446 bp 31.28 11.94 90.84
rifcsphigho2_12_scaffold_17243 11 8155 bp 33.10 12.82 78.47
rifcsphigho2_12_scaffold_45851 9 8286 bp 33.38 11.89 73.90
rifcsphigho2_12_scaffold_38423 8 5258 bp 29.84 11.55 74.69
rifcsphigho2_12_scaffold_78814 8 5065 bp 32.48 10.87 81.03
rifcsphigho2_12_scaffold_28710 7 6634 bp 31.11 10.22 79.77
rifcsphigho2_12_scaffold_22099 7 6981 bp 34.12 12.81 77.61
Displaying 43 items

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.