ggKbase home page

rifcsplowo2_01_scaffold_91909_6

Organism: RIFCSPLOWO2_01_FULL_Archaea_35_10b

near complete RP 34 / 55 MC: 4 BSCG 9 / 51 ASCG 32 / 38 MC: 1
Location: comp(4721..4900)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase, RpoE2, archaeal n=2 Tax=mine drainage metagenome RepID=T1B6C8_9ZZZZ similarity UNIREF
DB: UNIREF100
  • Identity: 50.8
  • Coverage: 59.0
  • Bit_score: 69
  • Evalue 1.30e-09
DNA-directed RNA polymerase, subunit E' similarity KEGG
DB: KEGG
  • Identity: 50.8
  • Coverage: 59.0
  • Bit_score: 69
  • Evalue 3.70e-10
Transcription elongation factor Spt4 {ECO:0000256|HAMAP-Rule:MF_00949}; TaxID=1301915 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus.;" sourc similarity UNIPROT
DB: UniProtKB
  • Identity: 50.8
  • Coverage: 59.0
  • Bit_score: 69
  • Evalue 1.80e-09

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Methanocaldococcus sp. JH146 → Methanocaldococcus → Methanococcales → Methanococci → Euryarchaeota → Archaea

Sequences

DNA sequence
Length: 180
ATGAAGGCATGCAGAACTTGTAGATATATTGTGGATATAGAAAAAACCTGCCCAAAATGCCAGGGAGAGGTAAGTGACAAATTTCATGGAATGATTATTATTCTAAATCCAGAAAAATCAGAAATAGCAAAAACCGCAGAAATAAATTCTGTTGGAAGATATGCGATAAAAGTCAAATGA
PROTEIN sequence
Length: 60
MKACRTCRYIVDIEKTCPKCQGEVSDKFHGMIIILNPEKSEIAKTAEINSVGRYAIKVK*