ggKbase home page

rifcsplowo2_01_scaffold_51104_7

Organism: RIFCSPLOWO2_01_FULL_Archaea_Woeserachaeota_30_9

partial RP 36 / 55 MC: 7 BSCG 9 / 51 MC: 1 ASCG 23 / 38 MC: 3
Location: 3293..5002

Top 3 Functional Annotations

Value Algorithm Source
Transcription factor TFIIB cyclin-related protein n=1 Tax=Methanotorris formicicus Mc-S-70 RepID=H1KYE3_9EURY similarity UNIREF
DB: UNIREF100
  • Identity: 42.1
  • Coverage: 565.0
  • Bit_score: 438
  • Evalue 1.40e-119
Transcription factor TFIIB cyclin-related protein similarity KEGG
DB: KEGG
  • Identity: 40.7
  • Coverage: 567.0
  • Bit_score: 412
  • Evalue 2.30e-112
Transcription factor TFIIB cyclin-related protein {ECO:0000313|EMBL:AIJ05956.1}; TaxID=1301915 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus similarity UNIPROT
DB: UniProtKB
  • Identity: 40.7
  • Coverage: 567.0
  • Bit_score: 412
  • Evalue 1.10e-111

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Methanocaldococcus sp. JH146 → Methanocaldococcus → Methanococcales → Methanococci → Euryarchaeota → Archaea

Sequences

DNA sequence
Length: 1710
ATGCCTCACTATATCAAAAAATGTCCAGAATGCGGTGGAATTAACTTAAATATTAATAAGGAAAAAGGCGAGATTTCTTGCAGAAGCTGCGGTTTAATCATTGAAGAAAGAATGGTTGACTTTGGCCAGGAATGGCGTGAGTTTGAAGATAAGTCAAATTCCAGAAGAAGAGCAGGGCAGGCATTAACTTACAGCGTTGATTATGCAGAGCCAGTTGTTATAAAGGAAGATGGAATTATAAAAATTGTAAAGATAGGAAAATTCATTGATAATATTATGGCAGAAAATATTTCATTCATCAAGAAAGATGGAATAATTGAATATACTCCTGTAACTAATATAGAATCTGTCTCCTTTGATAAGAATCATGAGATTAAATTCAGAAAAATAAGCGAAGTTTCCAGGCATCCTGCAGAAGAGGTGTATGAAGTATTATTGGAGACTGGAAAGAGAGTAAAGGTAACTGGAAATCACAGCATATTCAGCGTTAAAAACAATGAAATAGCTTCAATTAGAGTTGATAAATTACAGCCAGGAAATTTTATAATAGCACCTAAAGAAATTCCTTTAATAGAAAACATCAAAGAAATTAATTTATTAGACCAATTTATAATATTGGGAAAAAAGTATCCGCTTTTATATTTAAGGAACTTTTCTGATGATAAATTATTCAATAAATTAAAGGTTTTGGAGAAGGAAAACCGGATTTCAGGAAGCAAAATCAAAAGCTGGAAAACATGCAAAATTATTCCTTTATGGGTTTTAAATGAGCTTTCCAGAAATATTAATATTTATGATTACAATATAAATGGATGCAGAATTGGATTCTTCAGCAGTAACTCTACACTGCCTTTAAGGCTAGAAATTAATAATAATATAGCCAGCTTATTAGGATTTTTCACTGCAGAAGGCACAGTAAAAGAACATGGTGTGGTATTCTCTTTTGGGTCCCATGAAGTTGATTACATTGAAAAAGTAATTTCAATTATGAGTAATACATTTGATGCGAATTATGGAGTTTATAATAAAAGCACATCTGCTACTCAAATAGAATTTAGAAGCAAACCTTTAAGCATCTTATTTAAAGAAATACTTAAGACCGGATCCAATGCTCATACAAAAAGGGTTCCTGAACTAATATATTCTGTGCCAATAGAATTAAAGAAAGAATATTTAACCAGTTATATTCATGGTGATGGAGGTATTGTAATTACAGAGCATTCTGGATTCAGGCCCGATGTTTGTGTTTCAACAAATTCTGTCAGTGAAGATCTGACTAATGACTTTATTTTATTATACTCGCAATTAGGAATTCATGCTAATTATCAAGAAGCTTTTATCAATGGTCATATTATTCAAAAAACAGGACAATATATAAAAGAAAGCATTTCAAAAAGAGCTTTAATCAAAAATCCAGATACTGCTTTTGAACTTGGTTTTTTAACTAACAAACCATTAAAAAATTTAGGTAAGGGAGCTATTGAGAATTTCATTCCTGCACCGCAAGAATATAAAAAAGAATGGAAATATAGAAAGATGATCAGGATTGAGAGGAAAATGGCTTTAAAAATAGCCAATAAATATTCTGACGAAAAACTCAAAAAATTAGTAGAATCACCATTTTTATTTTTAAGGGTTAAAAGCATCAAAAAAGTAAAATCTACTTCTGGTTATGCCTATGATTTTACAGTTCCTGGCTATGAAAATTTT
PROTEIN sequence
Length: 570
MPHYIKKCPECGGINLNINKEKGEISCRSCGLIIEERMVDFGQEWREFEDKSNSRRRAGQALTYSVDYAEPVVIKEDGIIKIVKIGKFIDNIMAENISFIKKDGIIEYTPVTNIESVSFDKNHEIKFRKISEVSRHPAEEVYEVLLETGKRVKVTGNHSIFSVKNNEIASIRVDKLQPGNFIIAPKEIPLIENIKEINLLDQFIILGKKYPLLYLRNFSDDKLFNKLKVLEKENRISGSKIKSWKTCKIIPLWVLNELSRNINIYDYNINGCRIGFFSSNSTLPLRLEINNNIASLLGFFTAEGTVKEHGVVFSFGSHEVDYIEKVISIMSNTFDANYGVYNKSTSATQIEFRSKPLSILFKEILKTGSNAHTKRVPELIYSVPIELKKEYLTSYIHGDGGIVITEHSGFRPDVCVSTNSVSEDLTNDFILLYSQLGIHANYQEAFINGHIIQKTGQYIKESISKRALIKNPDTAFELGFLTNKPLKNLGKGAIENFIPAPQEYKKEWKYRKMIRIERKMALKIANKYSDEKLKKLVESPFLFLRVKSIKKVKSTSGYAYDFTVPGYENF