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RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_8418_16

Organism: Candidatus Giovannonibacteria bacterium RIFCSPLOWO2_01_FULL_43_160

near complete RP 43 / 55 MC: 1 BSCG 45 / 51 ASCG 9 / 38
Location: 10689..11273

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma-24 factor {ECO:0000313|EMBL:KKT21874.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 194.0
  • Bit_score: 384
  • Evalue 1.10e-103
RNA polymerase, sigma-24 subunit, ECF subfamily protein id=3736405 bin=GWC2_OD1_43_27 species=Flavobacterium sp. CF136 genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete) similarity UNIREF
DB: UNIREF100
  • Identity: 47.8
  • Coverage: 186.0
  • Bit_score: 171
  • Evalue 8.10e-40
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 32.8
  • Coverage: 183.0
  • Bit_score: 97
  • Evalue 3.20e-18

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Taxonomy

GWC2_OD1_43_8 → Giovannonibacteria → Parcubacteria → Bacteria

Sequences

DNA sequence
Length: 585
ATGTATTTGGATTTGAAGACAAATTTCGCGGATCTCGCGGACGATGAAATTCTGAAGAAGTCACAGGACAATCCTTCGCTTTTTTCGGTTTTGATTGATAAATACCAGCTTCCTTTCGTGAGAAAAGCGCAGGGAATAGTCCACTCCAAAGAGGAAGCCGAAGACATTGTGCAGGAGACTTTCACCAAAATTTATTTAAACGCGGGAAAATTTAAAAAACAGCCGGGCGTGGAATTTAAAAGCTGGGCCTGGCGGATTTTGGTGAATACTTCACTTACTCATTATAGAAAGCTCAAAAAAAGTTTCGGAGACGTAGGTTATCTGGACGAAATTTTGGCGGACGACGAAAAAACCGAATCGCTTTTTTCCATGGAAGATAATCTGGACAGAAACGAGAATATAGGCGAGGTGCGTGAGGCGATTGAGAAAATGCCTTCCGAGGCGGCCGAGCTTTTGCGGGCGCATTATGTGGAGGACCGGCCTTACGCCGAAATTGCCAGAAAACAGGGGATTTCCATAGGCGCTTTAAAGATGAAACTTTTTCGCGCGCGCAAGGTTTTAAAGGATATCATGAAGCAGGCTTAA
PROTEIN sequence
Length: 195
MYLDLKTNFADLADDEILKKSQDNPSLFSVLIDKYQLPFVRKAQGIVHSKEEAEDIVQETFTKIYLNAGKFKKQPGVEFKSWAWRILVNTSLTHYRKLKKSFGDVGYLDEILADDEKTESLFSMEDNLDRNENIGEVREAIEKMPSEAAELLRAHYVEDRPYAEIARKQGISIGALKMKLFRARKVLKDIMKQA*