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RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_2468_54

Organism: Candidatus Giovannonibacteria bacterium RIFCSPLOWO2_01_FULL_45_140

near complete RP 43 / 55 BSCG 47 / 51 ASCG 10 / 38
Location: comp(42286..42849)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:KKT57088.1}; TaxID=1618652 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_44_23. similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 187.0
  • Bit_score: 371
  • Evalue 7.20e-100
RNA polymerase, sigma-24 subunit, ECF subfamily id=4731799 bin=GWC2_OD1_43_27 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete) similarity UNIREF
DB: UNIREF100
  • Identity: 57.0
  • Coverage: 193.0
  • Bit_score: 228
  • Evalue 5.40e-57
RNA polymerase, sigma-24 subunit, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 35.7
  • Coverage: 171.0
  • Bit_score: 111
  • Evalue 2.10e-22

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Taxonomy

Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_44_23 → Parcubacteria → Bacteria

Sequences

DNA sequence
Length: 564
ATGAATCGCTCGGACGCGGAGCTTGTGGCCGACCATCTTTCTGGCAATGAAAAATCGCTGGAGGTTTTGATTAAACGGAATCTTAAGCCTGTTTACGGTTTTGTGTATAAATACGCCGGCAACGCAGAAAATTCGGAAGATATCACCCAAGACGTTTTTGTGAAAATGTGGAAAAATCTTAAGCGATTTGATCAGAACAAAAATTTCAGAACATGGCTTTTTGCCATTGCCAAAAATTCGGCGATTGATTTTCTCAAGAAAAAAAAAGCCGTGCCCTTCTCCGAATTCGAGAACAAATACGGAGAAAATGTGATCGCCGAAACTTTTCGCGATCTCTCGCCTATCCCGTCGGAACTCTCGGAAAGAAAAGAGAAATACCGCTGCCTCGCTTTAGTGGCAGCAAAACTGCCGCAGAAATACGGGGAAGTGCTTTCTTTAAGATATGATAAGGACCTATCTTTTTCGGAAATTGCGCGATTTTTGGGCGAAAAACTAAACACCGTCAAAAGCCGCCATCGCCGGGCAATTATGATTCTGAAATCGGTCTTTTTGCGCCAAAAATAA
PROTEIN sequence
Length: 188
MNRSDAELVADHLSGNEKSLEVLIKRNLKPVYGFVYKYAGNAENSEDITQDVFVKMWKNLKRFDQNKNFRTWLFAIAKNSAIDFLKKKKAVPFSEFENKYGENVIAETFRDLSPIPSELSERKEKYRCLALVAAKLPQKYGEVLSLRYDKDLSFSEIARFLGEKLNTVKSRHRRAIMILKSVFLRQK*