ggKbase home page

RIFCSPLOWO2_02_FULL_Pseudomonas_63_210_rifcsplowo2_02_scaffold_873985_1

Organism: Pseudomonadales bacterium RIFCSPLOWO2_02_FULL_63_210

partial RP 38 / 55 MC: 6 BSCG 40 / 51 MC: 6 ASCG 6 / 38 MC: 3
Location: comp(3..965)

Top 3 Functional Annotations

Value Algorithm Source
Porin, LamB type n=1 Tax=Pseudomonas mendocina (strain ymp) RepID=A4XRF5_PSEMY similarity UNIREF
DB: UNIREF100
  • Identity: 87.3
  • Coverage: 306.0
  • Bit_score: 563
  • Evalue 1.60e-157
porin, LamB type; K02024 maltoporin Tax=RIFCSPLOWO2_02_FULL_Pseudomonas_63_210_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 321.0
  • Bit_score: 657
  • Evalue 8.60e-186
porin, LamB type similarity KEGG
DB: KEGG
  • Identity: 87.3
  • Coverage: 306.0
  • Bit_score: 563
  • Evalue 4.50e-158

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

R_Pseudomonas_63_210 → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 963
ATGAAGATCAGTCTCAACCCAGTGCTATCCCGCAGTCCCCTTGGTGCGCGCGGCGCGCCCTGCCTGCTGGCCCTGGCCCTCGCTCTGGCCTTGCCCCAGGCCCAGGCCCTCGAGTTCAGCGGCTATGTACGCAGCGGCGCCGGCAGTGCGGACGGCAATGGCAGCCAGTCGTGCTTCCAGTTGCCCGGTGCCCAGTCGAAATACCGCCTGGGCAACGAGTGCGAGCACTACATGGAGCTGGACCTGCGCCAGGACCTGCTGACCCTGGACGACGGCTCGGTGCTCAACGTCGAGGGCATGGCCCAGCTGTACAACGAATACGGCCACACGCCCGAGTTCACCGGCGACTACGGCTTCGCGCGGATGAACCAGATGTACGCCGAATTGAGCAACATGCCGGCGCTCAATGGCGGCTCGTTCTGGGCCGGGCGGCGCTTCTACAAGCGTAACGACATCCATATCTCCGACTTCTACTACTGGAACCAGAGCGCCACCGGCGCCGGTATCGAGGACTTCGAGCTGGGCGGGCTGAAATACAGCTACGCCTTCTCGCGCAAGGACAGCTACTTCCAGGAACCCTATATCAATCGTCACGATTTCAACGTGGCCGGCTTCAAGACCAATCCCGGCGGCGAGCTGGAGTTCGGCCTGAGCTACATCGACAAGCCCGACAGCACGGATGCCAACAGTGGTTGGGCGCTTACCGCGCAGCATGTGCAGAGCGATTTCCTCGGCGGCAAGAACAAATTCGCCCTGCAGTATGGTCGCGGTCCGGGTACCGGCCTGGGTTACACCGGCGACGTCAGCCTGGATCGTGACAACAAGAGCTATCGCCTGGTGGAGTTCTTCGACTGGCAGATCACCCCGCGCCTGGGCGGCCAGGTGCAGTTCGTCTACCAGAAAGACGTGCGCCCGGATGGCAGCGACCAGGACTGGCTGTCGGTCGGTGGGCGTACCAGCTAT
PROTEIN sequence
Length: 321
MKISLNPVLSRSPLGARGAPCLLALALALALPQAQALEFSGYVRSGAGSADGNGSQSCFQLPGAQSKYRLGNECEHYMELDLRQDLLTLDDGSVLNVEGMAQLYNEYGHTPEFTGDYGFARMNQMYAELSNMPALNGGSFWAGRRFYKRNDIHISDFYYWNQSATGAGIEDFELGGLKYSYAFSRKDSYFQEPYINRHDFNVAGFKTNPGGELEFGLSYIDKPDSTDANSGWALTAQHVQSDFLGGKNKFALQYGRGPGTGLGYTGDVSLDRDNKSYRLVEFFDWQITPRLGGQVQFVYQKDVRPDGSDQDWLSVGGRTSY