ggKbase home page

RIFCSPLOWO2_02_FULL_Pseudomonas_63_210_rifcsplowo2_02_scaffold_22631_4

Organism: Pseudomonadales bacterium RIFCSPLOWO2_02_FULL_63_210

partial RP 38 / 55 MC: 6 BSCG 40 / 51 MC: 6 ASCG 6 / 38 MC: 3
Location: comp(1730..2290)

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma-24 subunit n=1 Tax=Pseudomonas stutzeri NF13 RepID=M2VHV5_PSEST similarity UNIREF
DB: UNIREF100
  • Identity: 62.4
  • Coverage: 186.0
  • Bit_score: 222
  • Evalue 3.80e-55
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 62.4
  • Coverage: 186.0
  • Bit_score: 220
  • Evalue 3.10e-55

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

R_Pseudomonas_63_210 → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 561
ATGCACGACTCGGAAGAACGGTTGATCCAGCAGGCCCAGGCGGGCAATCGGCATGCTTTCGGCTCGCTGATGCAACGCAACCAGGCGCGCGTATTCCAGTTCGTCCGGCGTTTGTGCGCCGGCGGCGACGAGGCGCTGGACATCACCCAGGACACCTTCCTCAAGGCCTATCTGGCCTTGGACAAATGGCGGCCTGAGGCGCGCTTTCAGACCTGGCTGCTGCAGATCGCCCGCAACACCACCCTGGATGCGCTGCGCCGGCAGCGGCGTCAGTCATGCGCAGACCTCGAGGACTGCGGTCAGCTGGTCAGTCCCGTGGCGTCCCCGGAACAGCAGTTGGCCGGTGCGCAGCGCCTCGCCCTGTTGGAACGTCTGCTGGCCCGGCTGCCGCTGGAGCATCGGGAAATCCTGCTGCTGCGTGAAGTCGAGGGTCTGTCCTATGCAGAGCTGGCGACCACCCTGGGCATCGAGCAGGGAACGGTCAAGTCGCGGCTGGCCCGGGCCCGCGAGGCCATGCTGAGTAGTTATCGACATGCGAACGGAGGGCAACTGGATGACTGA
PROTEIN sequence
Length: 187
MHDSEERLIQQAQAGNRHAFGSLMQRNQARVFQFVRRLCAGGDEALDITQDTFLKAYLALDKWRPEARFQTWLLQIARNTTLDALRRQRRQSCADLEDCGQLVSPVASPEQQLAGAQRLALLERLLARLPLEHREILLLREVEGLSYAELATTLGIEQGTVKSRLARAREAMLSSYRHANGGQLDD*