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RIFCSPLOWO2_02_FULL_Pseudomonas_63_210_rifcsplowo2_02_scaffold_34149_5

Organism: Pseudomonadales bacterium RIFCSPLOWO2_02_FULL_63_210

partial RP 38 / 55 MC: 6 BSCG 40 / 51 MC: 6 ASCG 6 / 38 MC: 3
Location: comp(2139..2687)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pseudomonas fulva (strain 12-X) RepID=F6AH46_PSEF1 similarity UNIREF
DB: UNIREF100
  • Identity: 78.6
  • Coverage: 182.0
  • Bit_score: 284
  • Evalue 8.10e-74
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 79.1
  • Coverage: 182.0
  • Bit_score: 285
  • Evalue 1.30e-74

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Taxonomy

R_Pseudomonas_63_210 → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 549
TTGTTGCGGCGTTATCGCCTGGGTGACGCCGAGGCCTTTGCACTGCTCTATCAACGCCATCGCCTCGGCCTGTTTCGTTTTCTCTGTGGTCTGTGCGGCGATCCGACGCTGGCCGAGGAGGTGTTCCAGGACACCTGGATGAGCCTGATCCGCAGCCAGTCGCTGCAGCGTGAGGCGGTGCTGTTCAAGACCTGGCTGTACCAGATCGCGCGCAATCGCCTGATCGATCACTGGCGCAAATCGGGCCGCCAGCAGGGCAGGCATGAGGCGTTCGACGAGCAGCTGCATGACCGGCCATGCAGCGAGACCAACCCTGAGCAGCAGCTCAGTTTGAGTCGCGACCAGGAGCGCCTGCAGGCCGCGCTGGCCGATCTGCCGCCGGAACAACGCGAAGTCTTCCTGCTGCGCGCCCACGGCGATCTGGAGTTGCACGAGATCGCCGAGTTGACCCGCACGCCAGCGGAAACGGTGAAAAGCCGTTTGCGCTATGCGTTGCAGAAATTACGTCGGCTGCTGGCTGACCCGGCCGCCGAGGAGCTATCCGCATGA
PROTEIN sequence
Length: 183
LLRRYRLGDAEAFALLYQRHRLGLFRFLCGLCGDPTLAEEVFQDTWMSLIRSQSLQREAVLFKTWLYQIARNRLIDHWRKSGRQQGRHEAFDEQLHDRPCSETNPEQQLSLSRDQERLQAALADLPPEQREVFLLRAHGDLELHEIAELTRTPAETVKSRLRYALQKLRRLLADPAAEELSA*