ggKbase home page

rifcsplowo2_12_scaffold_1620_13

Organism: RIFCSPLOWO2_12_FULL_Micrarchaeota_37_11

near complete RP 33 / 55 MC: 6 BSCG 16 / 51 ASCG 37 / 38
Location: 9278..10063

Top 3 Functional Annotations

Value Algorithm Source
exosome complex RNA-binding protein Rrp42 (EC:3.1.13.-); K12589 exosome complex component RRP42 Tax=CG_Micra_01 similarity UNIPROT
DB: UniProtKB
  • Identity: 52.4
  • Coverage: 254.0
  • Bit_score: 262
  • Evalue 8.60e-67
Exosome complex component Rrp42 n=1 Tax=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) RepID=RRP42_THEGJ similarity UNIREF
DB: UNIREF100
  • Identity: 49.2
  • Coverage: 260.0
  • Bit_score: 250
  • Evalue 1.80e-63
rrp42p; exosome complex RNA-binding protein Rrp42 similarity KEGG
DB: KEGG
  • Identity: 49.2
  • Coverage: 260.0
  • Bit_score: 250
  • Evalue 5.20e-64

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

CG_Micra_01 → Micraarchaeota → Archaea

Sequences

DNA sequence
Length: 786
ATGTCTGAAGAATTTAAGGAAATTATAATGTCTCATCTAAGAAAAGATGTTTTGTCGAATTCGCTTAAAAAAGGAGAGCGTTTCGATCAAAGAAAATTTGATGAATTTAGATCAATTGAGATTCAGAAAAGTGTAATAAAAAATGCAGAAGGTTCAGCATTTGTTAAATTAGGAAACACACAAGTGCTCGTAGGTGTAAAATTTGATGTTGTTACACCATATTCAGATCGTCCGAATGAAGGTACGATGGTTACAAATGCAGAATTGCTTCCTTTGGCAAGCTCAACGTTTGAGCCAGGTCCACCAGATGAGAATTCTGTTGAGCTCGCGCGCGTAGTTGATCGCGGCATAAGAAGCGCAGAATGCATTGATGTCAAATCACTATTTATAGAAGAAGGGAAGGTTCTTAGTGTGTATATTGATTTATACGTATTGGATCATTCTGGAAACTTTATTGATGCGAGCTCGATTGCTGCGATTGCTGCATTGACTGATACGAAAGTACCAAAGGTCGAGGATGGGAAAATAATAAGAAAAGAACATAAAGGAAAGCTTGATTTAAAGGCATTGCCAGTTACGGTTACTTCGATACGCGTGGATGATTTCTGGTTGGTTGACCCTACTATTGAAGAGGAACTTGCAATGGATTCGCGATTAACTATTGCTACTACTGGAACACATGTTGCTGCTGTTCAGAAAGGCAAAGGTTCGCTTACTAAAAAGGAGTTTTTGGATAATTTGGACATAGCTTTTAAAAGAGGTAACGACATAAGAAAATTGTTGTGA
PROTEIN sequence
Length: 262
MSEEFKEIIMSHLRKDVLSNSLKKGERFDQRKFDEFRSIEIQKSVIKNAEGSAFVKLGNTQVLVGVKFDVVTPYSDRPNEGTMVTNAELLPLASSTFEPGPPDENSVELARVVDRGIRSAECIDVKSLFIEEGKVLSVYIDLYVLDHSGNFIDASSIAAIAALTDTKVPKVEDGKIIRKEHKGKLDLKALPVTVTSIRVDDFWLVDPTIEEELAMDSRLTIATTGTHVAAVQKGKGSLTKKEFLDNLDIAFKRGNDIRKLL*