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RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_1379_13

Organism: Pseudomonadales bacterium RIFCSPLOWO2_12_FULL_59_450

near complete RP 41 / 55 MC: 5 BSCG 45 / 51 MC: 2 ASCG 14 / 38 MC: 2
Location: comp(12431..13681)

Top 3 Functional Annotations

Value Algorithm Source
Putative porin-like membrane protein n=1 Tax=Pseudomonas sp. CFT9 RepID=S6IEJ8_9PSED similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 416.0
  • Bit_score: 851
  • Evalue 3.80e-244
outer membrane porin, OprD family Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 416.0
  • Bit_score: 851
  • Evalue 5.30e-244
outer membrane porin, OprD family similarity KEGG
DB: KEGG
  • Identity: 99.8
  • Coverage: 416.0
  • Bit_score: 849
  • Evalue 3.10e-244
  • rbh

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Taxonomy

RLO_Pseudomonas_60_38 → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1251
ATGAGCACTTTCCAACCGCGCCAGCTGTTGCTGGCGGCTGCTGTCGCCAGTTCTGCCCTGCCCGTTCTCGCCCAGGATCACGGCTTTCTCGAAGACGCCAGCGCCAACCTCAACCTGCGTAATTTCTTCTTCAACCGCAACTACACCAACCCGACCAAGGCTCAGGGTGGCGCGCAAGAGTGGACGCAAAGTTTCATTCTCGACGCCAAGTCCGGGTTCACCCAAGGCACAGTCGGTTTTGGTGTGGATGTGCTGGGCTTGTACTCGCTCAAGCTCGATGGCGGGCGTGGCACAGGCGGCACGCAGTTGCTGCCGCTGGACCATGACGGCCGGCCAGCCGATGAGTTTGGCCGGCTGGGCGTGGCATTCAAGGCGCGCTTTTCCAAGACCGAGCTGAAGGTGGGCGAATGGATGCCGGTGCTGCCGATCCTGCGTTCCGACGATGGCCGCTCCCTGCCACAGACCCTGCGTGGCGGGCAGATCACCTCGAAGGAAATCGACGGCCTGACCCTCTATGGCGGCCAATTCCGCGCCAATAGCCCGCGGGACGACGGCAGCATGAGCGACATGTCGATGTTCGGCAAAACCGCCTTCACCTCCGACCGTTTCAACTTCCAGGGCGCCGAATACGCGTTCAACGACAAACGCACCCAAGTCGGCGTGTGGAATGCCCAGCTCAAGGACATCTACAGCCAGCAGTTCGTCAATCTGATCCACAGCCAGCCTGTGGGCGACTGGACCCTGGGCGCCAACCTGGGCTTCTTTTACGGTAAGGACGACGGCAGCGCCCGCGCCGGCGACCTGGACAACAAAACCTGGTCCGGTTTGTTCTCGGCCAGGTACGGTGGCAACACCTTCTACGTCGGCCTGCAAAAACTCACCGGCGACAGTGCCTGGATGCGCGTCAACGGCACCAGCGGCGGCACCCTGGCCAACGACAGCTACAACTCCAGCTATGACAACGCACAGGAAAAATCCTGGCAGGTTCGCCACGACTACAACTTCGCCGCCCTCGGTGTACCAGGCCTGACCCTGATGAACCGCTATATCAGCGGCAGCAACGTGCACACCGGCACCATCACCGACGGCAAGGAGTGGGGCCGCGAGACCGAAGTAGGCTATACGGTGCAAAGCGGCACGCTGAAAAACCTCAACGTGCGCTGGCGCAATTCGAGCATGCGCAGGGACTACAGCAACAACGAGTTCGATGAGAACCGGTTGATCGTCAGCTATCCGATCAGTCTGCTGTAA
PROTEIN sequence
Length: 417
MSTFQPRQLLLAAAVASSALPVLAQDHGFLEDASANLNLRNFFFNRNYTNPTKAQGGAQEWTQSFILDAKSGFTQGTVGFGVDVLGLYSLKLDGGRGTGGTQLLPLDHDGRPADEFGRLGVAFKARFSKTELKVGEWMPVLPILRSDDGRSLPQTLRGGQITSKEIDGLTLYGGQFRANSPRDDGSMSDMSMFGKTAFTSDRFNFQGAEYAFNDKRTQVGVWNAQLKDIYSQQFVNLIHSQPVGDWTLGANLGFFYGKDDGSARAGDLDNKTWSGLFSARYGGNTFYVGLQKLTGDSAWMRVNGTSGGTLANDSYNSSYDNAQEKSWQVRHDYNFAALGVPGLTLMNRYISGSNVHTGTITDGKEWGRETEVGYTVQSGTLKNLNVRWRNSSMRRDYSNNEFDENRLIVSYPISLL*