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RifOxyA1_UNK

In projects: RIFOXYA1

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 6.70 Longest contig: 79.10 Kbp Bin length: 16.73 Mbp GC content: 44.57 %
Contigs count: 7788 Features count: 27774 rRNAs count: 6 tRNAs count: 0

Genome completeness

megabin RP 52 / 55 MC: 45 BSCG 49 / 51 MC: 46 ASCG 34 / 38 MC: 28
Displaying items 51-100 of 7606 in total
contig # features sequence size GC content (%) Cov Coding Density (%) notes
rifoxya1_sub10_scaffold_84 27 19758 bp 47.43 6.54 89.16
rifoxya1_sub10_scaffold_116 27 15583 bp 42.39 7.79 73.54
rifoxya1_sub10_scaffold_141 27 16882 bp 42.53 31.12 91.73
rifoxya1_sub10_scaffold_164 27 9838 bp 34.35 6.33 88.59
rifoxya1_sub10_scaffold_138 26 14939 bp 36.50 4.96 97.22
rifoxya1_sub10_scaffold_159 26 22310 bp 48.47 7.51 92.16
rifoxya1_sub10_scaffold_127 25 12013 bp 37.86 61.11 93.90
rifoxya1_sub10_scaffold_128 25 11598 bp 33.09 6.38 89.08
rifoxya1_sub10_scaffold_99 24 21758 bp 33.62 7.10 96.38
rifoxya1_sub10_scaffold_398 24 8520 bp 36.27 7.24 84.79
rifoxya1_sub10_scaffold_170 24 9631 bp 38.41 5.73 84.66
rifoxya1_sub10_scaffold_185 24 12517 bp 41.86 5.12 76.58
rifoxya1_sub10_scaffold_238 24 16591 bp 36.86 119.95 88.02
rifoxya1_sub10_scaffold_100 23 16233 bp 58.60 9.11 95.12
rifoxya1_sub10_scaffold_112 23 14609 bp 32.70 7.82 94.71
rifoxya1_sub10_scaffold_124 23 12372 bp 42.33 8.15 82.23
rifoxya1_sub10_scaffold_133 23 11434 bp 36.93 16.61 88.03
rifoxya1_sub10_scaffold_144 23 10803 bp 44.48 25.08 83.78
rifoxya1_sub10_scaffold_103
Species: GWF2_TM6_33_332 (90.91%)
22 15793 bp 38.16 6.14 99.44
rifoxya1_sub10_scaffold_123 22 13026 bp 40.10 14.82 88.51
rifoxya1_sub10_scaffold_143 22 14417 bp 38.11 6.93 92.72
rifoxya1_sub10_scaffold_165 22 9817 bp 51.70 7.81 86.70
rifoxya1_sub10_scaffold_770 22 9447 bp 41.58 8.89 86.95
rifoxya1_sub10_scaffold_109 21 14695 bp 39.29 6.49 83.11
rifoxya1_sub10_scaffold_281 20 10367 bp 47.21 5.63 86.26
rifoxya1_sub10_scaffold_286 20 13561 bp 37.96 6.59 92.38
rifoxya1_sub10_scaffold_562 20 10015 bp 54.81 5.71 95.92
rifoxya1_sub10_scaffold_179 20 9168 bp 35.78 5.43 91.95
rifoxya1_sub10_scaffold_218
Class: Woesebacteria (85%)
20 17649 bp 34.89 6.47 90.48
rifoxya1_sub10_scaffold_94
Domain: Bacteria (63.16%)
19 18318 bp 42.72 6.77 89.90
rifoxya1_sub10_scaffold_104 19 15726 bp 41.27 6.10 88.40
rifoxya1_sub10_scaffold_360 19 10665 bp 39.92 6.32 93.61
rifoxya1_sub10_scaffold_125 19 12220 bp 38.71 8.89 93.58
rifoxya1_sub10_scaffold_404 19 9100 bp 39.52 5.08 82.91
rifoxya1_sub10_scaffold_180 19 10548 bp 66.79 18.10 94.11
rifoxya1_sub10_scaffold_229 19 7610 bp 33.50 4.69 88.46
rifoxya1_sub10_scaffold_1000 19 8284 bp 34.78 4.27 89.81
rifoxya1_sub10_scaffold_253 19 11998 bp 65.18 7.20 92.57
rifoxya1_sub10_scaffold_509 19 7758 bp 53.84 21.04 73.94
rifoxya1_sub10_scaffold_269 18 7514 bp 46.70 4.87 91.11
rifoxya1_sub10_scaffold_287 18 9115 bp 42.36 5.48 87.25
rifoxya1_sub10_scaffold_323 18 6673 bp 34.21 7.40 78.63
rifoxya1_sub10_scaffold_171
Species: GWD1_WS6_35_594 (50%)
18 12155 bp 37.73 9.80 93.94
rifoxya1_sub10_scaffold_197 18 8474 bp 44.90 6.97 78.38
rifoxya1_sub10_scaffold_466 18 8084 bp 34.48 6.23 93.93
rifoxya1_sub10_scaffold_510 18 7916 bp 47.61 12.60 85.61
rifoxya1_sub10_scaffold_82
Species: marine sediment metagenome (94.12%)
17 30333 bp 34.79 6.35 98.72
rifoxya1_sub10_scaffold_343 17 12279 bp 37.62 8.05 90.96
rifoxya1_sub10_scaffold_129 17 12177 bp 41.66 12.16 85.76
rifoxya1_sub10_scaffold_654 17 5750 bp 65.53 15.55 100.64
Displaying items 51-100 of 7606 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.