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RIFOXYB1_FULL_Pacearchaeota_32_14

RIFOXYB1_FULL_Archaea_33_14
In projects: RIFOXYB1_FULL  |  archaea-rifleo2  |  rifle_organic_carbon  |  rifle-organic-carbon-non-redundant  |  cpr-dpann-all  |  DPANN  |  archaea_ggkbase

Consensus taxonomy: Archaea

Taxonomy override: Pacearchaeota

Description

partial but good candidate for curation

Displaying 36 items
contig # features sequence size GC content (%) Cov Coding Density (%)
rifoxyb1_full_scaffold_330
Domain: Archaea (75.28%)
88 59263 bp 32.70 14.16 86.50
rifoxyb1_full_scaffold_169 86 65449 bp 32.27 14.48 83.82
rifoxyb1_full_scaffold_204
Domain: Archaea (59.3%)
86 65954 bp 32.23 15.06 87.56
rifoxyb1_full_scaffold_310
Domain: Archaea (60.26%)
69 60086 bp 33.65 14.89 84.50
rifoxyb1_full_scaffold_701
Domain: Archaea (79.1%)
67 56653 bp 32.44 14.55 86.87
rifoxyb1_full_scaffold_640
Domain: Archaea (68.42%)
57 47295 bp 32.09 13.98 89.20
rifoxyb1_full_scaffold_838 42 34951 bp 33.61 13.98 67.96
rifoxyb1_full_scaffold_483
Domain: Archaea (73.17%)
38 33337 bp 32.10 15.97 80.45
rifoxyb1_full_scaffold_484
Domain: Archaea (69.44%)
36 31021 bp 32.25 14.24 86.77
rifoxyb1_full_scaffold_685
Domain: Archaea (66.67%)
29 24163 bp 32.26 14.61 85.99
rifoxyb1_full_scaffold_1554 26 24247 bp 31.29 13.62 78.27
rifoxyb1_full_scaffold_910 25 22152 bp 32.83 14.66 83.53
rifoxyb1_full_scaffold_1264
Domain: Archaea (56%)
23 23463 bp 33.60 14.47 86.95
rifoxyb1_full_scaffold_1680
Phylum: Pacearchaeota (52.17%)
22 15329 bp 32.91 14.24 87.97
rifoxyb1_full_scaffold_1898
Domain: Archaea (73.68%)
19 18186 bp 32.10 12.55 90.17
rifoxyb1_full_scaffold_2462
Domain: Archaea (52.63%)
19 13727 bp 29.83 13.88 86.52
rifoxyb1_full_scaffold_2549
Phylum: Pacearchaeota (50%)
19 12714 bp 32.77 13.64 86.79
rifoxyb1_full_scaffold_2145
Domain: Archaea (50%)
17 12100 bp 31.25 13.91 83.53
rifoxyb1_full_scaffold_1652
Species: CG_Pacearch_05 (55.56%)
17 14257 bp 33.14 16.18 77.58
rifoxyb1_full_scaffold_1714
Domain: Archaea (52.94%)
17 13355 bp 33.44 15.87 85.29
rifoxyb1_full_scaffold_5174
Domain: Archaea (56.25%)
16 9312 bp 32.33 12.98 85.34
rifoxyb1_full_scaffold_2505
Phylum: DPANN (50%)
16 10457 bp 31.37 13.08 77.06
rifoxyb1_full_scaffold_6449
Domain: Archaea (75%)
12 6398 bp 31.45 14.56 83.18
rifoxyb1_full_scaffold_2454
Domain: Archaea (54.55%)
10 10604 bp 30.59 12.80 91.01
rifoxyb1_full_scaffold_5367
Phylum: Pacearchaeota (54.55%)
10 11938 bp 34.55 13.23 87.28
rifoxyb1_full_scaffold_6479
Species: CG_Pacearch_05 (66.67%)
9 8119 bp 32.97 14.60 90.12
rifoxyb1_full_scaffold_6176
Domain: Archaea (75%)
8 5637 bp 31.33 15.01 91.01
rifoxyb1_full_scaffold_7391
Domain: Archaea (50%)
8 9652 bp 32.78 14.10 91.69
rifoxyb1_full_scaffold_6802
Species: CG_Pacearch_05 (62.5%)
8 5694 bp 34.55 15.91 93.78
rifoxyb1_full_scaffold_4653
Species: CG_Pacearch_05 (50%)
8 6801 bp 33.26 15.57 80.77
rifoxyb1_full_scaffold_7367
Domain: Archaea (57.14%)
7 5963 bp 29.85 14.84 96.55
rifoxyb1_full_scaffold_4961 7 6494 bp 33.38 14.76 78.53
rifoxyb1_full_scaffold_10007
Species: CG_Pacearch_05 (71.43%)
7 7363 bp 32.74 14.32 86.66
rifoxyb1_full_scaffold_21828
Domain: Archaea (50%)
6 5222 bp 30.89 14.19 80.20
rifoxyb1_full_scaffold_9424
Phylum: Pacearchaeota (80%)
5 5242 bp 32.01 15.05 77.26
rifoxyb1_full_scaffold_4730
Species: CG_Pacearch_05 (66.67%)
3 6732 bp 33.73 14.28 94.21
Displaying 36 items

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.