ggKbase home page

RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_403_28

Organism: Bacteroidetes bacterium RIFOXYC2_FULL_40_12

near complete RP 52 / 55 MC: 2 BSCG 50 / 51 ASCG 14 / 38
Location: 31662..32225

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor, ECF subfamily id=4327141 bin=GWF2_Bacteroidetes_40_13 species=Algoriphagus machipongonensis genus=Algoriphagus taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_40_13 organism_group=Bacteroidetes similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 188.0
  • Bit_score: 367
  • Evalue 9.70e-99
ECF subfamily RNA polymerase sigma-24 factor Tax=GWE2_Bacteroidetes_40_63_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 187.0
  • Bit_score: 367
  • Evalue 1.40e-98
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 37.6
  • Coverage: 178.0
  • Bit_score: 129
  • Evalue 7.30e-28

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

GWE2_Bacteroidetes_40_63_curated → Bacteroidia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 564
ATGACAGAACCACAATTTGAAAACCTTTTTAAAACCTATTTTCCAACTTTAATCAATGTGGCCAATTCGGTGGTTAAAGATCCGGATGATGCCCGTGATGTGGTGCAACAGGTCTTTATAAAACTTTGGAACTTGAAGGAGGAGGTATCTGTGGATCAAAATATCAAATCTTATTTGCACCGCTCAGTTATCAATACCTCATTAAATTTTATCGAAAAAAAACAACGCACCGTTTCTGAGAATCTGCTTAGCGAATCGACATTGCACAGCCAGCAAACCCAACCTACGAGCGATTATTTAAAAGACGAGGTTGAAACGGCAATTAAAAAAGCCATTGAGGCTTTACCCGAAAAATGCCAATTGGTATTTTCGTTGAGCCGGTATTCTGATATGAGCAATAAAGAAATCGCCGAGCATTTGGATATTAGTATCAAAGCCGTTGAAAAACACATTAGTAAAGCTTTGAGAGATTTACGGGTTTCATTAAAACCTTATATCGATGCCTTTGGATTATTTTTATTTTTTGAGGTAGGGTTAAGTACCATTCACCTGTTCTATTCATAG
PROTEIN sequence
Length: 188
MTEPQFENLFKTYFPTLINVANSVVKDPDDARDVVQQVFIKLWNLKEEVSVDQNIKSYLHRSVINTSLNFIEKKQRTVSENLLSESTLHSQQTQPTSDYLKDEVETAIKKAIEALPEKCQLVFSLSRYSDMSNKEIAEHLDISIKAVEKHISKALRDLRVSLKPYIDAFGLFLFFEVGLSTIHLFYS*