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RTP_01242018_0_2um_Hydrogenophilales_61_5

RTP_01242018_0_2um_RIFOXYD1_FULL_Hydrogenophilales_62_11_curated_61_5
In projects: RTP_01242018_0_2um  |  SOB_across_mines  |  SOB_across_mines

Consensus taxonomy: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated  →  Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 451-500 of 1197 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_01242018_0_2um_scaffold_3081
Species: Thiobacillus denitrificans (100%)
3 3188 bp 65.84 5.32 96.64
RTP_01242018_0_2um_scaffold_9415
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1310 bp 59.24 5.15 96.64
RTP_01242018_0_2um_scaffold_3202
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 3086 bp 65.36 5.74 96.63
RTP_01242018_0_2um_scaffold_5677
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1838 bp 56.04 5.39 96.63
RTP_01242018_0_2um_scaffold_4458
Species: Thiobacillus denitrificans (100%)
2 2251 bp 60.64 7.66 96.62
RTP_01242018_0_2um_scaffold_2755
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 3606 bp 61.37 7.24 96.59
RTP_01242018_0_2um_scaffold_2868
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 3426 bp 62.81 4.99 96.58
RTP_01242018_0_2um_scaffold_3683
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 2669 bp 61.90 4.33 96.55
RTP_01242018_0_2um_scaffold_4991
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 2051 bp 55.00 7.46 96.54
RTP_01242018_0_2um_scaffold_3834
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 2564 bp 64.47 4.45 96.53
RTP_01242018_0_2um_scaffold_7599
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1502 bp 63.65 5.89 96.47
RTP_01242018_0_2um_scaffold_3628
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 2712 bp 60.91 3.76 96.46
RTP_01242018_0_2um_scaffold_10873
Species: Thiobacillus denitrificans (100%)
2 1204 bp 68.19 3.61 96.43
RTP_01242018_0_2um_scaffold_10921
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1201 bp 60.78 4.00 96.42
RTP_01242018_0_2um_scaffold_8209
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1423 bp 61.42 4.64 96.35
RTP_01242018_0_2um_scaffold_7240
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1552 bp 60.50 3.96 96.26
RTP_01242018_0_2um_scaffold_7835
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1468 bp 62.26 5.72 96.25
RTP_01242018_0_2um_scaffold_8425
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1403 bp 70.63 7.27 96.22
RTP_01242018_0_2um_scaffold_7790
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1475 bp 60.47 6.31 96.20
RTP_01242018_0_2um_scaffold_2660
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 3755 bp 63.25 6.11 96.19
RTP_01242018_0_2um_scaffold_3657
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
4 2692 bp 63.56 7.47 96.17
RTP_01242018_0_2um_scaffold_3509
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 2817 bp 62.30 4.90 96.17
RTP_01242018_0_2um_scaffold_6250
Species: Thiobacillus denitrificans (100%)
2 1716 bp 56.99 4.55 96.15
RTP_01242018_0_2um_scaffold_10643
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
1 1220 bp 58.28 4.30 96.15
RTP_01242018_0_2um_scaffold_2798
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (60%)
5 3529 bp 58.88 5.06 96.15
RTP_01242018_0_2um_scaffold_4020
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 2465 bp 64.02 4.69 96.15
RTP_01242018_0_2um_scaffold_3241
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 3058 bp 58.24 4.95 96.14
RTP_01242018_0_2um_scaffold_6553
Order: Hydrogenophilales (100%)
3 1657 bp 59.93 5.16 96.14
RTP_01242018_0_2um_scaffold_11522
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1164 bp 62.20 6.57 96.13
RTP_01242018_0_2um_scaffold_13578
Order: Hydrogenophilales (66.67%)
3 1055 bp 57.16 4.12 96.11
RTP_01242018_0_2um_scaffold_12997
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
4 1084 bp 56.37 5.67 96.03
RTP_01242018_0_2um_scaffold_12559
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1106 bp 66.64 3.93 96.02
RTP_01242018_0_2um_scaffold_8140
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 1431 bp 60.45 4.61 96.02
RTP_01242018_0_2um_scaffold_4231
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 2350 bp 52.81 6.38 96.00
RTP_01242018_0_2um_scaffold_7584
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1504 bp 64.89 6.68 95.94
RTP_01242018_0_2um_scaffold_4791
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 2120 bp 64.43 5.87 95.94
RTP_01242018_0_2um_scaffold_6712
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1626 bp 65.07 5.72 95.94
RTP_01242018_0_2um_scaffold_13538
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1057 bp 59.98 4.68 95.93
RTP_01242018_0_2um_scaffold_6493
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1670 bp 55.69 3.05 95.93
RTP_01242018_0_2um_scaffold_11316
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1176 bp 60.63 6.12 95.92
RTP_01242018_0_2um_scaffold_6407
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1683 bp 66.55 4.19 95.90
RTP_01242018_0_2um_scaffold_8608
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1383 bp 63.49 3.90 95.88
RTP_01242018_0_2um_scaffold_10787
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1211 bp 57.72 3.72 95.87
RTP_01242018_0_2um_scaffold_3937
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 2510 bp 64.74 5.26 95.86
RTP_01242018_0_2um_scaffold_12647
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1102 bp 58.62 5.17 95.83
RTP_01242018_0_2um_scaffold_5322
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1945 bp 59.74 4.94 95.78
RTP_01242018_0_2um_scaffold_7831
Species: GWE1_Thiobacillus_62_9_curated (100%)
3 1469 bp 58.34 5.51 95.78
RTP_01242018_0_2um_scaffold_5502
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1889 bp 65.11 5.88 95.77
RTP_01242018_0_2um_scaffold_13493
Species: RBG_16_Betaproteobacteria_58_11_curated (50%)
2 1059 bp 53.64 4.82 95.75
RTP_01242018_0_2um_scaffold_4476
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 2245 bp 60.00 6.35 95.68
Displaying items 451-500 of 1197 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.