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RTP_01242018_0_2um_Hydrogenophilales_61_5

RTP_01242018_0_2um_RIFOXYD1_FULL_Hydrogenophilales_62_11_curated_61_5
In projects: RTP_01242018_0_2um  |  SOB_across_mines  |  SOB_across_mines

Consensus taxonomy: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated  →  Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 351-400 of 1197 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_01242018_0_2um_scaffold_10343
Species: GWE1_Thiobacillus_62_9_curated (100%)
2 1241 bp 58.58 3.51 98.15
RTP_01242018_0_2um_scaffold_1758
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
9 6398 bp 58.36 5.30 98.14
RTP_01242018_0_2um_scaffold_6827
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1608 bp 62.19 4.10 98.13
RTP_01242018_0_2um_scaffold_3363
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
4 2943 bp 63.06 5.71 98.06
RTP_01242018_0_2um_scaffold_14570
Species: GWE1_Thiobacillus_62_9_curated (100%)
2 1010 bp 56.53 5.05 98.02
RTP_01242018_0_2um_scaffold_9564
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1298 bp 58.94 3.81 98.00
RTP_01242018_0_2um_scaffold_10386
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1237 bp 64.59 4.97 97.98
RTP_01242018_0_2um_scaffold_3581
Species: Thiobacillus denitrificans (100%)
3 2756 bp 60.49 6.42 97.97
RTP_01242018_0_2um_scaffold_10617
Species: GWE1_Thiobacillus_62_9_curated (100%)
2 1222 bp 59.00 3.93 97.95
RTP_01242018_0_2um_scaffold_8446
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1400 bp 68.21 5.36 97.93
RTP_01242018_0_2um_scaffold_12689
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1100 bp 63.00 5.86 97.91
RTP_01242018_0_2um_scaffold_7394
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
4 1529 bp 60.10 7.46 97.91
RTP_01242018_0_2um_scaffold_8222
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1422 bp 63.43 5.49 97.89
RTP_01242018_0_2um_scaffold_9268
Species: Thiobacillus denitrificans (50%)
2 1324 bp 57.25 7.93 97.89
RTP_01242018_0_2um_scaffold_3172
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 3111 bp 66.22 6.03 97.88
RTP_01242018_0_2um_scaffold_7264
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1548 bp 63.44 5.33 97.87
RTP_01242018_0_2um_scaffold_5136
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
4 2005 bp 66.13 4.49 97.86
RTP_01242018_0_2um_scaffold_6836
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1607 bp 65.21 5.69 97.82
RTP_01242018_0_2um_scaffold_7877
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1463 bp 53.52 5.02 97.81
RTP_01242018_0_2um_scaffold_8308
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1414 bp 65.21 4.03 97.81
RTP_01242018_0_2um_scaffold_3718
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 2644 bp 58.28 4.88 97.81
RTP_01242018_0_2um_scaffold_7664
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 1494 bp 62.05 4.52 97.79
RTP_01242018_0_2um_scaffold_8453
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1399 bp 63.05 5.36 97.78
RTP_01242018_0_2um_scaffold_2743
Order: Hydrogenophilales (50%)
6 3618 bp 61.66 5.64 97.76
RTP_01242018_0_2um_scaffold_3071
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 3198 bp 63.16 4.92 97.75
RTP_01242018_0_2um_scaffold_12534
Species: GWE1_Thiobacillus_62_9_curated (100%)
3 1108 bp 52.53 4.87 97.74
RTP_01242018_0_2um_scaffold_9741
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1283 bp 59.39 3.04 97.74
RTP_01242018_0_2um_scaffold_12584
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
4 1105 bp 54.30 5.43 97.74
RTP_01242018_0_2um_scaffold_3447
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 2873 bp 65.58 6.00 97.74
RTP_01242018_0_2um_scaffold_4091
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 2425 bp 63.01 5.57 97.73
RTP_01242018_0_2um_scaffold_11193
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1182 bp 61.34 5.33 97.72
RTP_01242018_0_2um_scaffold_3338
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 2970 bp 60.71 5.61 97.68
RTP_01242018_0_2um_scaffold_10297
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1244 bp 59.97 5.79 97.67
RTP_01242018_0_2um_scaffold_4152
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
4 2394 bp 58.27 4.26 97.62
RTP_01242018_0_2um_scaffold_12856
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1091 bp 64.07 4.12 97.62
RTP_01242018_0_2um_scaffold_6763
Species: GWE1_Thiobacillus_62_9_curated (100%)
2 1617 bp 60.24 3.80 97.59
RTP_01242018_0_2um_scaffold_14186
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1027 bp 58.52 5.26 97.57
RTP_01242018_0_2um_scaffold_4064
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 2442 bp 60.85 5.22 97.54
RTP_01242018_0_2um_scaffold_4009
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 2470 bp 59.92 6.68 97.53
RTP_01242018_0_2um_scaffold_3146
Order: Hydrogenophilales (60%)
5 3138 bp 64.91 6.31 97.51
RTP_01242018_0_2um_scaffold_3377
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 2932 bp 64.02 6.50 97.51
RTP_01242018_0_2um_scaffold_9744
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1283 bp 55.03 3.04 97.51
RTP_01242018_0_2um_scaffold_2175
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (85.71%)
7 4871 bp 60.67 5.57 97.50
RTP_01242018_0_2um_scaffold_4723
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 2145 bp 58.93 4.97 97.48
RTP_01242018_0_2um_scaffold_5925
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1779 bp 57.62 3.88 97.47
RTP_01242018_0_2um_scaffold_7539
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1509 bp 61.56 6.56 97.42
RTP_01242018_0_2um_scaffold_7849
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1466 bp 62.21 3.17 97.41
RTP_01242018_0_2um_scaffold_9462
Species: GWE1_Thiobacillus_62_9_curated (50%)
4 1306 bp 51.84 3.79 97.40
RTP_01242018_0_2um_scaffold_11104
Species: GWE1_Thiobacillus_62_9_curated (100%)
3 1189 bp 62.15 5.05 97.39
RTP_01242018_0_2um_scaffold_7777
Species: Thiobacillus denitrificans (100%)
2 1476 bp 63.89 4.17 97.36
Displaying items 351-400 of 1197 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.