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RTP_02272018_0_2um_Hydrogenophilales_59_70

In projects: RTP_02272018_0_2um  |  SOB_across_mines  |  SOB_across_mines

Consensus taxonomy: Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Taxonomy override: Betaproteobacteria

Displaying items 151-177 of 177 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_02272018_0_2um_scaffold_9864
Species: GWE1_Thiobacillus_62_9_curated (75%)
4 1718 bp 54.95 62.25 71.07
RTP_02272018_0_2um_scaffold_4739
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
4 3722 bp 57.42 74.60 70.37
RTP_02272018_0_2um_scaffold_3327
Species: Thiobacillus denitrificans (66.67%)
3 5356 bp 56.81 65.39 94.27
RTP_02272018_0_2um_scaffold_11254
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1511 bp 57.91 83.09 94.11
RTP_02272018_0_2um_scaffold_6232
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 2810 bp 62.03 57.49 97.26
RTP_02272018_0_2um_scaffold_6781
Species: GWE1_Thiobacillus_62_9_curated (100%)
3 2563 bp 63.48 64.90 96.45
RTP_02272018_0_2um_scaffold_6536
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 2665 bp 56.74 57.58 85.55
RTP_02272018_0_2um_scaffold_5180
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 3393 bp 57.74 71.13 95.40
RTP_02272018_0_2um_scaffold_9306
Species: Thiobacillus denitrificans (66.67%)
3 1826 bp 62.27 58.41 95.62
RTP_02272018_0_2um_scaffold_5250
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 3344 bp 57.92 67.33 90.70
RTP_02272018_0_2um_scaffold_6673
Species: Candidatus Accumulibacter phosphatis (66.67%)
3 2602 bp 61.57 60.07 100.31
RTP_02272018_0_2um_scaffold_8975
Order: Gallionellales (66.67%)
3 3317 bp 59.66 71.72 92.61
RTP_02272018_0_2um_scaffold_9619
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1765 bp 57.85 56.69 98.07
RTP_02272018_0_2um_scaffold_12188
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1399 bp 60.83 76.55 37.10
RTP_02272018_0_2um_scaffold_11760
Species: RBG_16_Betaproteobacteria_58_11_curated (50%)
2 1449 bp 53.28 54.66 99.38
RTP_02272018_0_2um_scaffold_8558
Species: GWE1_Thiobacillus_62_9_curated (100%)
2 1993 bp 59.41 62.92 99.20
RTP_02272018_0_2um_scaffold_8114
Species: GWE1_Thiobacillus_62_9_curated (100%)
2 2105 bp 61.52 59.22 88.22
RTP_02272018_0_2um_scaffold_11425
Species: Thiobacillus denitrificans (100%)
2 1491 bp 62.84 65.90 98.99
RTP_02272018_0_2um_scaffold_4456
Species: Thiobacillus denitrificans (50%)
2 3982 bp 59.14 63.70 97.41
RTP_02272018_0_2um_scaffold_5004
Species: GWE1_Thiobacillus_62_9_curated (100%)
2 3515 bp 59.57 56.20 98.58
RTP_02272018_0_2um_scaffold_12130
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1405 bp 55.52 77.83 46.33
RTP_02272018_0_2um_scaffold_16226
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1049 bp 64.16 69.07 99.81
RTP_02272018_0_2um_scaffold_13916
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1222 bp 61.21 70.46 90.83
RTP_02272018_0_2um_scaffold_13677
Species: Thiobacillus denitrificans (100%)
1 1245 bp 53.65 52.17 99.76
RTP_02272018_0_2um_scaffold_14845
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
1 1143 bp 58.62 60.63 99.74
RTP_02272018_0_2um_scaffold_11339
Species: CG_Gallio_03 (100%)
1 1500 bp 61.33 83.60 92.60
RTP_02272018_0_2um_scaffold_5276
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 3330 bp 63.66 64.14 99.91
Displaying items 151-177 of 177 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.