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RTP_092018_0_1um_bin_28_55_57_0_85

RTP_092018_0_1um_Hydrogenophilales_63_6
In projects: RTP_092018_0_1um  |  SOB_across_mines

Consensus taxonomy: Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 501-550 of 594 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_092018_0_1um_scaffold_22038
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 3055 bp 63.11 5.45 97.91
RTP_092018_0_1um_scaffold_38466
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 1986 bp 66.41 5.44 72.66
RTP_092018_0_1um_scaffold_16383
Order: Hydrogenophilales (66.67%)
6 3886 bp 64.44 5.44 95.42
RTP_092018_0_1um_scaffold_13121
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (85.71%)
7 4663 bp 57.02 5.44 89.75
RTP_092018_0_1um_scaffold_52428
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
2 1572 bp 68.45 5.44 102.67
RTP_092018_0_1um_scaffold_32943
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
2 2236 bp 62.39 5.43 82.92
RTP_092018_0_1um_scaffold_35141
Order: Hydrogenophilales (100%)
5 2129 bp 63.27 5.43 98.36
RTP_092018_0_1um_scaffold_33983
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 2186 bp 62.85 5.42 97.71
RTP_092018_0_1um_scaffold_41991
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
4 1859 bp 63.64 5.41 95.37
RTP_092018_0_1um_scaffold_44694
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1773 bp 60.97 5.41 72.08
RTP_092018_0_1um_scaffold_38179
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
2 1997 bp 68.30 5.41 100.05
RTP_092018_0_1um_scaffold_43543
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1807 bp 64.08 5.40 100.11
RTP_092018_0_1um_scaffold_35973
Order: Hydrogenophilales (100%)
5 2089 bp 61.94 5.39 95.93
RTP_092018_0_1um_scaffold_33613
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 2203 bp 62.87 5.38 84.43
RTP_092018_0_1um_scaffold_15300
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (80%)
5 4105 bp 66.75 5.37 100.12
RTP_092018_0_1um_scaffold_37044
Order: Hydrogenophilales (66.67%)
3 2045 bp 62.10 5.35 87.43
RTP_092018_0_1um_scaffold_16462
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
2 3873 bp 64.01 5.34 97.99
RTP_092018_0_1um_scaffold_8064
Order: Hydrogenophilales (88.89%)
9 7291 bp 62.91 5.33 92.62
RTP_092018_0_1um_scaffold_29774
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (75%)
4 2419 bp 61.89 5.33 99.21
RTP_092018_0_1um_scaffold_38025
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (75%)
4 2003 bp 62.86 5.32 92.26
RTP_092018_0_1um_scaffold_43582
Species: mine drainage metagenome (66.67%)
3 1806 bp 68.44 5.32 97.34
RTP_092018_0_1um_scaffold_51946
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (75%)
4 1582 bp 54.74 5.31 73.01
RTP_092018_0_1um_scaffold_19879
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (75%)
4 3308 bp 62.48 5.31 74.09
RTP_092018_0_1um_scaffold_50588
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
3 1613 bp 66.34 5.30 100.99
RTP_092018_0_1um_scaffold_17611
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
6 3659 bp 61.74 5.29 100.35
RTP_092018_0_1um_scaffold_44830
Species: RBG_16_Gallionellales_57_15_curated (66.67%)
3 1769 bp 68.00 5.26 100.23
RTP_092018_0_1um_scaffold_16748
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
5 3822 bp 67.01 5.26 97.96
RTP_092018_0_1um_scaffold_33141
Order: Hydrogenophilales (50%)
4 2226 bp 62.49 5.26 86.12
RTP_092018_0_1um_scaffold_35480
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 2113 bp 59.25 5.25 76.95
RTP_092018_0_1um_scaffold_26272
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
4 2664 bp 67.00 5.24 101.69
RTP_092018_0_1um_scaffold_54784
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
1 1521 bp 63.51 5.23 100.00
RTP_092018_0_1um_scaffold_48583
Species: Thiobacillus denitrificans (100%)
2 1664 bp 64.90 5.23 97.36
RTP_092018_0_1um_scaffold_37811
Species: GWE1_Thiobacillus_62_9_curated (75%)
4 2012 bp 59.59 5.22 93.34
RTP_092018_0_1um_scaffold_15906
Order: Hydrogenophilales (80%)
5 3979 bp 58.58 5.20 86.71
RTP_092018_0_1um_scaffold_31026
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 2342 bp 62.21 5.19 85.57
RTP_092018_0_1um_scaffold_32403
Order: Hydrogenophilales (66.67%)
3 2264 bp 59.94 5.17 78.18
RTP_092018_0_1um_scaffold_26785
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 2623 bp 66.30 5.15 90.81
RTP_092018_0_1um_scaffold_44321
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
4 1783 bp 64.05 5.13 100.62
RTP_092018_0_1um_scaffold_27807
Species: Thiobacillus denitrificans (100%)
2 2550 bp 60.08 5.12 99.29
RTP_092018_0_1um_scaffold_46163
Order: Hydrogenophilales (100%)
3 1730 bp 65.38 5.12 92.77
RTP_092018_0_1um_scaffold_10784
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (71.43%)
7 5593 bp 64.12 5.12 94.73
RTP_092018_0_1um_scaffold_19812
Phylum: Proteobacteria (80%)
5 3315 bp 62.81 5.11 96.92
RTP_092018_0_1um_scaffold_17176
Order: Hydrogenophilales (85.71%)
7 3736 bp 62.66 5.10 97.40
RTP_092018_0_1um_scaffold_40344
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
3 1917 bp 62.75 5.09 99.69
RTP_092018_0_1um_scaffold_34552
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (75%)
4 2157 bp 62.08 5.08 84.98
RTP_092018_0_1um_scaffold_21087
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
4 3162 bp 59.49 5.08 100.19
RTP_092018_0_1um_scaffold_25056
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
1 2763 bp 62.00 5.05 100.00
RTP_092018_0_1um_scaffold_25076
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 2761 bp 57.59 5.05 49.76
RTP_092018_0_1um_scaffold_28936
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
3 2471 bp 67.66 5.04 89.84
RTP_092018_0_1um_scaffold_18506
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (60%)
5 3514 bp 63.83 5.04 87.42
Displaying items 501-550 of 594 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.