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ACD32_48_1

Organism: ACD32

partial RP 4 / 55 MC: 1 BSCG 4 / 51 ASCG 0 / 38
Location: comp(2..385)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ecf subfamily similarity KEGG
DB: KEGG
  • Identity: 31.7
  • Coverage: 126.0
  • Bit_score: 71
  • Evalue 1.60e-10
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=3 to=115 evalue=3.0e-18 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: superfamily
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 3.00e-18
Sigma70_r2 (db=HMMPfam db_id=PF04542 from=26 to=93 evalue=3.6e-11 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 3.60e-11

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Taxonomy

uncultured bacterium → Bacteria

Sequences

DNA sequence
Length: 384
ATGGATTATAAGCAGGCATCAGATATTGAGTTATGGTATTGTTGTCAGCAGGACGACATTCGGGCTTATAGTGAGCTGTTCGACCGGTATGCAAAATCGCTGTACCGGCAGGCTATCGCCTACGTCCATAACGAAATGGATGCGGAAGAACTGGTAATGGATCTGATGCTGAACCTTTGGGAAAAACGGGGACATTTGAAAGCCCATGCAGGCAACAACGTTAAAGCCTACCTGATGCTTTCCATGCGCAACCGCATCATTAACCATCTTCAAAAAAATATCCCGGACATGTCTTCCATCGATTTGCTCGAAGAAGACAGGCTCGTTGATAGCCGACAGGCTGACTATGGGATCATCTCCAGGGATATGGAAACCATCTACGAA
PROTEIN sequence
Length: 128
MDYKQASDIELWYCCQQDDIRAYSELFDRYAKSLYRQAIAYVHNEMDAEELVMDLMLNLWEKRGHLKAHAGNNVKAYLMLSMRNRIINHLQKNIPDMSSIDLLEEDRLVDSRQADYGIISRDMETIYE