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ACD39

Rifle_ACD_uncultured_bacterium_48_1
In projects: Rifle_ACD

Consensus taxonomy: uncultured bacterium  →  Bacteria

Metagenomic Context

Properties

Avg. coverage: 1.00 Longest contig: 19.19 Kbp Bin length: 3.91 Mbp GC content: 47.74 %
Contigs count: 1116 Features count: 4183 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 7 / 55 MC: 3 BSCG 9 / 51 MC: 6 ASCG 0 / 38

Description

unknown

Displaying items 1-50 of 1116 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
ACD39_53 ACD39_44746.16457.10
Species: uncultured bacterium (85%)
20 16495 bp 43.95 1.00 83.37
done Jill Banfield (11/15/12)
ACD39_750 ACD39_68440.19156.9
Species: uncultured bacterium (94.74%)
19 19194 bp 46.61 1.00 81.84
done Jill Banfield (11/15/12)
ACD39_207 ACD39_54196.16990.9
Species: uncultured bacterium (94.44%)
18 17028 bp 47.17 1.00 78.54
done Jill Banfield (11/15/12)
ACD39_249 ACD39_1139.17854.25
Species: uncultured bacterium (100%)
18 17900 bp 43.77 1.00 89.04
bin has unexpected variation in coverage: may be multiple strains? Jill Banfield (11/15/12)
ACD39_718 ACD39_3883.17441.22
Species: uncultured bacterium (93.33%)
15 17487 bp 46.73 1.00 90.86
done Jill Banfield (11/15/12)
ACD39_228 ACD39_33332.13188.9
Species: uncultured bacterium (86.67%)
15 13226 bp 45.07 1.00 83.06
done Jill Banfield (11/15/12)
ACD39_1114 ACD39p_36.12573.32
Species: uncultured bacterium (100%)
14 12619 bp 41.79 1.00 88.34
done Jill Banfield (11/15/12)
ACD39_316 ACD39_45612.8406.9
Species: uncultured bacterium (76.92%)
13 8444 bp 47.35 1.00 69.42
done Jill Banfield (11/15/12)
ACD39_356 ACD39_49277.14226.9
Species: uncultured bacterium (100%)
13 14264 bp 47.62 1.00 85.75
done Jill Banfield (11/15/12)
ACD39_1115 ACD39p_13976.13000.11
Species: uncultured bacterium (100%)
12 13038 bp 39.86 1.00 79.08
done Jill Banfield (11/15/12)
ACD39_1116 ACD39p_281.12408.26
Species: uncultured bacterium (100%)
12 12454 bp 42.95 1.00 86.98
done: note high cov Jill Banfield (11/15/12)
ACD39_152 ACD39_51534.12247.9
Species: uncultured bacterium (100%)
12 12285 bp 46.26 1.00 86.84
done Jill Banfield (11/15/12)
ACD39_6 ACD39_72779.10500.10
Species: uncultured bacterium (81.82%)
11 10538 bp 45.30 1.00 87.06
done Jill Banfield (11/15/12)
ACD39_310 ACD39_2021.10770.9
Species: uncultured bacterium (100%)
11 10804 bp 43.66 1.00 95.27
done Jill Banfield (11/15/12)
ACD39_180 ACD39_11317.8474.9
Species: uncultured bacterium (90%)
10 8512 bp 45.20 1.00 99.67
done Jill Banfield (11/15/12)
ACD39_491 ACD39_44251.7592.9
Species: uncultured bacterium (80%)
10 7630 bp 43.83 1.00 67.67
may need re-annotation Jill Banfield (11/15/12)
ACD39_273 ACD39_24519.6827.12
Species: uncultured bacterium (50%)
10 6865 bp 44.14 1.00 84.30
acyl CoA dehydrogenase proteins and electron transport; sim Victivallis vadensis Jill Banfield (11/15/12)
ACD39_280 ACD39_259620.7819.6
Species: uncultured bacterium (90%)
10 7853 bp 46.61 1.00 87.94
done Jill Banfield (11/15/12)
ACD39_538 ACD39_130642.8565.6
Species: uncultured bacterium (90%)
10 8599 bp 47.58 1.00 88.86
done Jill Banfield (11/15/12)
ACD39_50 ACD39_66925.5378.9
Species: uncultured bacterium (80%)
10 5416 bp 45.46 1.00 80.93
done Jill Banfield (11/15/12)
ACD39_69 ACD39_273634.7039.7
Species: uncultured bacterium (90%)
10 7073 bp 49.67 1.00 94.92
done Jill Banfield (11/15/12)
ACD39_352 ACD39_22034.8091.10
Species: uncultured bacterium (100%)
10 8129 bp 40.82 1.00 65.73
done Jill Banfield (11/15/12)
ACD39_128 ACD39_26454.8510.11
Species: uncultured bacterium (80%)
10 8548 bp 44.58 1.00 87.11
done Jill Banfield (11/15/12)
ACD39_517 ACD39_1383.9584.9
Species: uncultured bacterium (88.89%)
9 9622 bp 43.55 1.00 92.48
done Jill Banfield (11/15/12)
ACD39_272 ACD39_102909.4415.7
Species: uncultured bacterium (77.78%)
9 4449 bp 49.18 1.00 97.03
done Jill Banfield (11/15/12)
ACD39_305 ACD39_30848.10544.10
Species: uncultured bacterium (100%)
9 10582 bp 42.07 1.00 70.25
done Jill Banfield (11/15/12)
ACD39_337 ACD39_33107.6316.7
Species: uncultured bacterium (88.89%)
9 6350 bp 48.96 1.00 99.02
done Jill Banfield (11/15/12)
ACD39_90 ACD39_54340.8439.9
Species: uncultured bacterium (88.89%)
9 8477 bp 43.85 1.00 74.21
done Jill Banfield (11/15/12)
ACD39_626 ACD39_21415.6974.10
Species: uncultured bacterium (55.56%)
9 7012 bp 46.51 1.00 91.43
done Jill Banfield (11/15/12)
ACD39_647 ACD39_238835.10584.7
Species: uncultured bacterium (88.89%)
9 10618 bp 48.98 1.00 80.27
done Jill Banfield (11/15/12)
ACD39_145 ACD39_170617.7089.7
Species: uncultured bacterium (88.89%)
9 7123 bp 49.50 1.00 83.05
done Jill Banfield (11/15/12)
ACD39_435 ACD39_285377.5509.6
Species: uncultured bacterium (75%)
8 5543 bp 47.12 1.00 62.46
done Jill Banfield (11/15/12)
ACD39_471 ACD39_250110.4751.6
Species: uncultured bacterium (100%)
8 4785 bp 49.28 1.00 84.58
done Jill Banfield (11/15/12)
ACD39_473 ACD39_2647.7487.7
Species: uncultured bacterium (100%)
8 7521 bp 48.85 1.00 84.52
done Jill Banfield (11/15/12)
ACD39_489 ACD39_38511.6859.7
Species: uncultured bacterium (100%)
8 6893 bp 48.73 1.00 89.18
done Jill Banfield (11/15/12)
ACD39_754 ACD39_9072.9398.11
Species: uncultured bacterium (75%)
8 9436 bp 44.02 1.00 93.12
done Jill Banfield (11/15/12)
ACD39_246 ACD39_131960.8051.7
Species: uncultured bacterium (62.5%)
8 8085 bp 46.77 1.00 83.86
done Jill Banfield (11/15/12)
ACD39_248 ACD39_2152.5478.28
Species: uncultured bacterium (100%)
8 5532 bp 46.87 1.00 77.55
phage? Jill Banfield (11/15/12)
ACD39_16 ACD39_568032.4884.7
Species: uncultured bacterium (100%)
8 4918 bp 45.73 1.00 68.02
may need reannotation Jill Banfield (11/15/12)
ACD39_279 ACD39_23223.9691.9
Species: uncultured bacterium (100%)
8 9729 bp 46.66 1.00 68.12
done Jill Banfield (11/15/12)
ACD39_281 ACD39_12187.4634.7
Species: uncultured bacterium (87.5%)
8 4668 bp 50.77 1.00 98.97
done Jill Banfield (11/15/12)
ACD39_32 ACD39_234075.4516.7
Species: uncultured bacterium (87.5%)
8 4550 bp 45.45 1.00 89.21
annotation? Jill Banfield (11/15/12)
ACD39_564 ACD39_4415.8346.14
Species: uncultured bacterium (100%)
8 8384 bp 49.25 1.00 96.04
CRISPR Jill Banfield (11/15/12)
done Jill Banfield (11/15/12)
done Jill Banfield (11/15/12)
done Jill Banfield (11/15/12)
ACD39_63 ACD39_354566.5413.6
Species: uncultured bacterium (62.5%)
8 5447 bp 49.20 1.00 99.47
done? Jill Banfield (11/15/12)
ACD39_322 ACD39_3238.5469.11
Species: uncultured bacterium (100%)
8 5507 bp 41.33 1.00 66.41
done Jill Banfield (11/15/12)
ACD39_82 ACD39_468029.4748.5
Species: uncultured bacterium (75%)
8 4782 bp 45.23 1.00 59.97
done Jill Banfield (11/15/12)
ACD39_880 ACD39_93676.5635.7
Species: uncultured bacterium (87.5%)
8 5669 bp 47.86 1.00 82.92
done Jill Banfield (11/15/12)
done Jill Banfield (11/15/12)
ACD39_169 ACD39_3412.6779.8
Species: uncultured bacterium (100%)
8 6813 bp 47.13 1.00 99.52
done Jill Banfield (11/15/12)
ACD39_181 ACD39_7357.8170.8
Species: uncultured bacterium (85.71%)
7 8204 bp 47.43 1.00 97.85
ACD39_437 ACD39_313536.4627.6
Species: uncultured bacterium (100%)
7 4661 bp 47.61 1.00 90.88
Displaying items 1-50 of 1116 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.