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SCN_Xanthomonadaceae_25x

SCN-stock_Xanthomonadales_69_25
In projects: SCN-stock

Consensus taxonomy: Xanthomonadales  →  Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCN_Unknown

Properties

Avg. coverage: 25.24 Longest contig: 309.09 Kbp Bin length: 5.71 Mbp GC content: 68.67 %
Contigs count: 68 Features count: 4814 rRNAs count: 0 tRNAs count: 47

Genome completeness

near complete RP 52 / 55 BSCG 51 / 51 MC: 1 ASCG 13 / 38

Description

Full 52, connected

Displaying items 1-50 of 68 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cnbg_combo_scaffold_116 Xan25_1
Phylum: Proteobacteria (73.75%)
240 309092 bp 69.07 22.77 89.81
cnbg_combo_scaffold_123 Xan25_2b
Order: Xanthomonadales (75.37%)
203 221390 bp 68.66 24.59 91.32
cnbg_combo_scaffold_59 Xan25_2a
Class: Gammaproteobacteria (57.07%)
191 231819 bp 68.48 25.84 85.83
cnbg_combo_scaffold_198 Xan25_6
Order: Xanthomonadales (62.01%)
179 200021 bp 68.23 23.67 86.84
cnbg_combo_scaffold_50 Xan25_3
Order: Xanthomonadales (55.11%)
176 206951 bp 69.34 26.69 87.56
cnbg_combo_scaffold_89 Xan25_4
Order: Xanthomonadales (57.71%)
175 205505 bp 69.31 28.33 88.71
cnbg_combo_scaffold_75 Xan25_5
Order: Xanthomonadales (61.54%)
169 203640 bp 68.56 26.95 90.09
cnbg_combo_scaffold_126 Xan25_7
Order: Xanthomonadales (64.15%)
159 185625 bp 68.87 25.47 89.65
cnbg_combo_scaffold_125 Xan25_9
Order: Xanthomonadales (59.35%)
155 173390 bp 68.57 23.99 89.49
cnbg_combo_scaffold_293 Xan25_13
Class: Gammaproteobacteria (54.55%)
143 138567 bp 68.07 26.06 91.05
cnbg_combo_scaffold_30 Xan25_8
Order: Xanthomonadales (62.68%)
142 180378 bp 68.51 28.32 88.93
cnbg_combo_scaffold_155 Xan25_10
Class: Gammaproteobacteria (51.47%)
136 168305 bp 69.22 25.92 86.92
cnbg_combo_scaffold_119 Xan25_11
Order: Xanthomonadales (59.52%)
126 151675 bp 69.00 24.14 89.65
cnbg_combo_scaffold_43 Xan25_12
Order: Xanthomonadales (63.33%)
120 149750 bp 69.64 28.99 89.94
cnbg_combo_scaffold_67 Xan25_15
Order: Xanthomonadales (62.39%)
117 128536 bp 69.35 23.78 88.12
cnbg_combo_scaffold_188 Xan25_20
Class: Gammaproteobacteria (62.16%)
111 116680 bp 67.29 24.60 84.19
cnbg_combo_scaffold_196 Xan25_21
Order: Xanthomonadales (54.63%)
108 115147 bp 68.67 25.99 89.17
cnbg_combo_scaffold_85 Xan25_16
Class: Gammaproteobacteria (59.22%)
103 121501 bp 69.09 24.87 86.44
cnbg_combo_scaffold_252 Xan25_19
Class: Gammaproteobacteria (50.52%)
97 117088 bp 66.75 22.63 85.78
cnbg_combo_scaffold_177 Xan25_14
Order: Xanthomonadales (69.89%)
93 128633 bp 70.06 23.38 91.63
cnbg_combo_scaffold_83 Xan25_17
Order: Xanthomonadales (54.55%)
88 118295 bp 68.46 29.28 89.06
cnbg_combo_scaffold_153 Xan25_22
Order: Xanthomonadales (52.33%)
86 100439 bp 68.73 27.55 91.79
cnbg_combo_scaffold_239 Xan25_24
Order: Xanthomonadales (58.33%)
84 92609 bp 68.77 23.82 86.57
cnbg_combo_scaffold_80 Xan25_18
Class: Gammaproteobacteria (56.63%)
83 117640 bp 68.16 24.45 85.31
cnbg_combo_scaffold_242 Xan25_23
Order: Xanthomonadales (60.24%)
83 97534 bp 69.21 22.43 92.06
cnbg_combo_scaffold_345 Xan25_25
Order: Xanthomonadales (51.25%)
80 88125 bp 66.56 18.98 87.10
cnbg_combo_scaffold_149 Xan25_26
Order: Xanthomonadales (58.57%)
70 83867 bp 67.91 24.21 84.84
cnbg_combo_scaffold_202 Xan25_28
Phylum: Proteobacteria (72.73%)
66 75134 bp 71.08 22.58 91.95
cnbg_combo_scaffold_435 Xan25_30
Order: Xanthomonadales (63.08%)
65 70725 bp 68.62 25.00 89.51
cnbg_combo_scaffold_169 Xan25_27
Order: Xanthomonadales (54.24%)
59 75417 bp 68.46 24.54 89.74
cnbg_combo_scaffold_318 Xan25_39
Phylum: Proteobacteria (67.24%)
58 48531 bp 68.57 25.73 86.32
cnbg_combo_scaffold_310 Xan25_32
Order: Xanthomonadales (57.89%)
57 64102 bp 68.11 28.74 80.60
cnbg_combo_scaffold_392 Xan25_31
Order: Xanthomonadales (51.79%)
56 67975 bp 69.60 29.36 87.02
cnbg_combo_scaffold_246 Xan25_35
Order: Xanthomonadales (65.38%)
52 58948 bp 68.19 23.89 87.86
cnbg_combo_scaffold_458 Xan25_33
Class: Gammaproteobacteria (50.98%)
51 61811 bp 69.12 29.04 90.50
cnbg_combo_scaffold_300 Xan25_37
Order: Xanthomonadales (67.35%)
49 53665 bp 66.21 22.66 87.74
cnbg_combo_scaffold_271 Xan25_36
Class: Gammaproteobacteria (54.17%)
48 55687 bp 68.60 31.07 90.09
cnbg_combo_scaffold_245 Xan25_29
Phylum: Proteobacteria (56.52%)
46 70725 bp 68.88 26.03 88.39
cnbg_combo_scaffold_344 Xan25_41
Phylum: Proteobacteria (73.33%)
45 47294 bp 68.45 25.31 87.05
cnbg_combo_scaffold_519 Xan25_44
Order: Xanthomonadales (67.44%)
43 43922 bp 69.76 25.03 91.33
cnbg_combo_scaffold_550 Xan25_40
Class: Betaproteobacteria (51.22%)
41 47389 bp 68.06 31.47 89.68
cnbg_combo_scaffold_403 Xan25_34
Class: Gammaproteobacteria (53.66%)
41 59323 bp 69.65 24.33 88.65
cnbg_combo_scaffold_320 Xan25_38
Order: Xanthomonadales (62.5%)
40 50645 bp 68.64 27.00 88.24
cnbg_combo_scaffold_361 Xan25_42
Order: Xanthomonadales (56.41%)
39 44570 bp 67.24 21.80 86.70
cnbg_combo_scaffold_712 Xan25_46
Order: Xanthomonadales (53.85%)
39 38330 bp 66.75 23.05 87.44
cnbg_combo_scaffold_363 Xan25_43
Order: Xanthomonadales (78.38%)
37 44369 bp 69.15 24.70 92.17
cnbg_combo_scaffold_696 Xan25_49
Class: Gammaproteobacteria (52.78%)
36 34667 bp 68.88 23.65 88.72
cnbg_combo_scaffold_597 Xan25_66a
Phylum: Proteobacteria (60.71%)
28 29465 bp 61.81 16.82 78.19
cnbg_combo_scaffold_475 Xan25_50
Order: Xanthomonadales (50%)
28 34599 bp 68.35 22.80 89.11
cnbg_combo_scaffold_573 Xan25_48
Order: Xanthomonadales (66.67%)
27 34951 bp 70.13 22.38 88.16
Displaying items 1-50 of 68 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.