ggKbase home page
Advanced Search
Search Help

SCN_Rhodanobacter_43x

SCN-stock_Xanthomonadales_66_43
In projects: SCN-stock

Consensus taxonomy: Xanthomonadales  →  Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCN_Unknown

Properties

Avg. coverage: 43.39 Longest contig: 340.61 Kbp Bin length: 3.54 Mbp GC content: 65.79 %
Contigs count: 28 Features count: 3192 rRNAs count: 0 tRNAs count: 45

Genome completeness

near complete RP 52 / 55 MC: 2 BSCG 51 / 51 MC: 2 ASCG 12 / 38

Description

Full 48

Displaying 28 items
contig # features sequence size GC content (%) Cov Coding Density (%)
cnbg_combo_scaffold_42 Rhd43_5
Order: Xanthomonadales (75.48%)
310 340614 bp 66.15 45.06 90.81
cnbg_combo_scaffold_12 Rhd43_1
Order: Xanthomonadales (69.8%)
255 273392 bp 65.91 42.01 91.31
cnbg_combo_scaffold_24 Rhd43_2
Order: Xanthomonadales (65.29%)
170 191093 bp 65.65 47.78 91.55
cnbg_combo_scaffold_56 Rhd43_8
Order: Xanthomonadales (77.44%)
164 190750 bp 65.46 42.99 90.61
cnbg_combo_scaffold_60 Rhd43_9
Order: Xanthomonadales (77.22%)
158 159878 bp 66.45 43.92 91.13
cnbg_combo_scaffold_129 Rhd43_16
Order: Xanthomonadales (75.95%)
158 165755 bp 66.07 45.69 89.95
cnbg_combo_scaffold_27 Rhd43_3
Order: Xanthomonadales (75%)
152 185720 bp 65.40 40.81 90.81
cnbg_combo_scaffold_40 Rhd43_4
Order: Xanthomonadales (67.76%)
152 152576 bp 65.33 45.00 90.67
cnbg_combo_scaffold_64 Rhd43_10
Order: Xanthomonadales (69.13%)
149 165738 bp 64.70 40.83 87.06
cnbg_combo_scaffold_71 Rhd43_11b
Class: Gammaproteobacteria (51.37%)
146 148999 bp 64.98 39.82 89.76
cnbg_combo_scaffold_46 Rhd43_6
Order: Xanthomonadales (61.76%)
136 146333 bp 65.12 39.19 88.33
cnbg_combo_scaffold_68 Rhd43_11a
Order: Xanthomonadales (81.82%)
132 170509 bp 66.45 49.15 93.08
cnbg_combo_scaffold_52 Rhd43_7
Order: Xanthomonadales (76.67%)
120 138725 bp 66.31 40.46 92.81
cnbg_combo_scaffold_72 Rhd43_12
Order: Xanthomonadales (67.54%)
114 125823 bp 65.34 42.00 89.00
cnbg_combo_scaffold_91 Rhd43_13
Order: Xanthomonadales (69.3%)
114 115767 bp 66.16 41.32 90.17
cnbg_combo_scaffold_174 Rhd43_18
Order: Xanthomonadales (81.48%)
108 143052 bp 66.53 46.93 89.69
cnbg_combo_scaffold_102 Rhd43_14
Order: Xanthomonadales (73.96%)
96 117090 bp 66.90 48.54 92.02
cnbg_combo_scaffold_146 Rhd43_25
Order: Xanthomonadales (63.04%)
92 84895 bp 65.47 32.45 87.88
cnbg_combo_scaffold_104 Rhd43_15
Order: Xanthomonadales (86.21%)
87 105164 bp 65.63 42.78 92.11
cnbg_combo_scaffold_156 Rhd43_17
Order: Xanthomonadales (77.22%)
79 81315 bp 65.69 46.91 87.54
cnbg_combo_scaffold_183 Rhd43_19
Order: Xanthomonadales (88.89%)
72 71378 bp 66.82 43.54 90.73
cnbg_combo_scaffold_189 Rhd43_20
Order: Xanthomonadales (71.88%)
64 70943 bp 65.04 38.63 90.28
cnbg_combo_scaffold_452 Rhd43_22
Order: Xanthomonadales (73.47%)
49 66830 bp 65.01 41.35 88.77
cnbg_combo_scaffold_269 Rhd43_21
Order: Xanthomonadales (87.5%)
48 55102 bp 66.95 48.36 90.74
cnbg_combo_scaffold_502 Rhd43_23
Order: Xanthomonadales (73.53%)
34 32684 bp 64.66 44.78 83.15
cnbg_combo_scaffold_902 Rhd43_24
Species: Rhodanobacter fulvus (57.14%)
14 15640 bp 66.07 46.41 98.15
cnbg_combo_scaffold_859 Rhd64_253a
Order: Xanthomonadales (53.85%)
13 16418 bp 63.73 43.96 88.65
cnbg_combo_scaffold_3949 Rhd43_26
Order: Xanthomonadales (100%)
6 8173 bp 65.92 33.22 92.43
Displaying 28 items

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.