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SCN_Rubrivivax_15x

SCN-stock_Burkholderiales_70_15
In projects: SCN-stock  |  SCN_92

Consensus taxonomy: Burkholderiales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCN_Unknown

Properties

Avg. coverage: 15.43 Longest contig: 54.86 Kbp Bin length: 4.03 Mbp GC content: 70.40 %
Contigs count: 267 Features count: 4132 rRNAs count: 0 tRNAs count: 35

Genome completeness

near complete RP 48 / 55 MC: 4 BSCG 48 / 51 MC: 2 ASCG 12 / 38

Description

Full 48

Displaying items 1-50 of 267 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cnbg_combo_scaffold_751 Burk15_18
Order: Burkholderiales (74.58%)
59 54865 bp 68.14 15.37 88.96
cnbg_combo_scaffold_505 Burk15_1
Order: Burkholderiales (94%)
50 51072 bp 71.44 15.49 95.72
cnbg_combo_scaffold_1109 Burk15_69
Order: Burkholderiales (58.33%)
48 40558 bp 71.43 15.71 88.75
cnbg_combo_scaffold_753 Burk15_266
Class: Betaproteobacteria (70.21%)
47 46009 bp 68.53 14.28 89.81
cnbg_combo_scaffold_667 Burk15_10
Order: Burkholderiales (92.5%)
40 39524 bp 71.29 16.09 94.18
cnbg_combo_scaffold_657 Burk15_8
Order: Burkholderiales (61.54%)
39 39892 bp 62.46 16.03 85.52
cnbg_combo_scaffold_1259 Burk15_87
Order: Burkholderiales (76.92%)
39 36131 bp 69.65 16.13 88.09
cnbg_combo_scaffold_545 Burk15_5
Genus: Rubrivivax (63.16%)
38 30793 bp 71.86 15.36 92.00
cnbg_combo_scaffold_693 Burk15_13
Order: Burkholderiales (73.68%)
38 38674 bp 72.51 15.42 92.35
cnbg_combo_scaffold_527 Burk15_3
Order: Burkholderiales (86.49%)
37 38891 bp 71.60 15.39 93.73
cnbg_combo_scaffold_1216 Burk15_81
Order: Burkholderiales (72.22%)
36 34756 bp 72.27 15.78 92.93
cnbg_combo_scaffold_740 Burk15_16
Order: Burkholderiales (75%)
36 31318 bp 70.24 15.31 88.28
cnbg_combo_scaffold_1045 Burk15_59
Genus: Rubrivivax (74.29%)
35 33414 bp 71.24 15.41 93.62
cnbg_combo_scaffold_924 Burk15_42
Order: Burkholderiales (73.53%)
34 29435 bp 69.83 14.94 92.82
cnbg_combo_scaffold_977 Burk15_48
Order: Burkholderiales (85.29%)
34 37824 bp 70.47 15.60 90.18
cnbg_combo_scaffold_900 Burk15_39
Order: Burkholderiales (90.91%)
33 29578 bp 71.18 16.10 92.38
cnbg_combo_scaffold_945 Burk15_44
Order: Burkholderiales (81.25%)
32 34977 bp 71.00 15.61 88.73
cnbg_combo_scaffold_749 Burk15_17
Order: Burkholderiales (93.75%)
32 32287 bp 71.86 15.38 92.96
cnbg_combo_scaffold_542 Burk15_4
Order: Burkholderiales (93.55%)
31 30300 bp 70.37 15.92 90.22
cnbg_combo_scaffold_1379 Burk15_112
Order: Burkholderiales (96.77%)
31 32853 bp 71.17 15.77 92.17
cnbg_combo_scaffold_663 Burk15_9
Genus: Rubrivivax (53.33%)
30 29751 bp 70.81 16.36 95.38
cnbg_combo_scaffold_818 Burk15_26
Order: Burkholderiales (55.17%)
29 28054 bp 70.68 15.63 95.65
cnbg_combo_scaffold_568 Burk15_6
Order: Burkholderiales (72.41%)
29 28668 bp 63.60 16.58 97.01
cnbg_combo_scaffold_575 Burk15_7
Genus: Rubrivivax (62.07%)
29 30012 bp 71.24 16.38 92.68
cnbg_combo_scaffold_1801 Burk15_170
Order: Burkholderiales (64.29%)
28 18625 bp 70.12 14.82 89.52
cnbg_combo_scaffold_1504 Burk15_133
Order: Burkholderiales (92.86%)
28 21310 bp 70.60 15.82 94.55
cnbg_combo_scaffold_1546 Burk15_143
Order: Burkholderiales (92.59%)
27 28402 bp 69.95 15.51 92.54
cnbg_combo_scaffold_729 Burk15_15
Order: Burkholderiales (62.96%)
27 29376 bp 71.08 15.02 95.01
cnbg_combo_scaffold_520 Burk15_2
Genus: Rubrivivax (57.69%)
26 31582 bp 68.95 15.18 90.12
cnbg_combo_scaffold_1361 Burk15_109
Order: Burkholderiales (69.23%)
26 19088 bp 69.37 15.21 91.31
cnbg_combo_scaffold_1155 Burk15_77
Genus: Rubrivivax (61.54%)
26 12289 bp 65.61 15.28 85.12
cnbg_combo_scaffold_942 Burk15_43
Order: Burkholderiales (76.92%)
26 24146 bp 69.72 14.49 88.29
cnbg_combo_scaffold_838 Burk15_261
Order: Burkholderiales (80%)
25 27204 bp 70.72 15.13 95.58
cnbg_combo_scaffold_1890 Burk15_178
Order: Burkholderiales (88%)
25 20782 bp 65.75 15.39 88.62
cnbg_combo_scaffold_906 Burk15_40
Species: Rubrivivax benzoatilyticus (52%)
25 29043 bp 70.87 16.19 95.02
cnbg_combo_scaffold_1505 Burk15_134
Order: Burkholderiales (80%)
25 19967 bp 71.89 15.30 89.04
cnbg_combo_scaffold_1321 Burk15_99
Genus: Rubrivivax (54.17%)
24 18014 bp 70.91 15.10 89.75
cnbg_combo_scaffold_856 Burk15_34
Genus: Rubrivivax (75%)
24 19019 bp 71.28 15.99 93.67
cnbg_combo_scaffold_764 Burk15_19
Order: Burkholderiales (87.5%)
24 20060 bp 71.86 14.66 87.65
cnbg_combo_scaffold_1035 Burk15_57
Order: Burkholderiales (86.96%)
23 17697 bp 69.63 15.23 96.17
cnbg_combo_scaffold_792 Burk15_22
Genus: Rubrivivax (60.87%)
23 23996 bp 69.97 15.79 93.75
cnbg_combo_scaffold_793 Burk15_23
Species: Rubrivivax benzoatilyticus (52.17%)
23 20229 bp 70.47 16.26 92.91
cnbg_combo_scaffold_1329 Burk15_101
Genus: Rubrivivax (69.57%)
23 24442 bp 71.41 15.97 88.99
cnbg_combo_scaffold_881 Burk15_37
Order: Burkholderiales (60.87%)
23 25031 bp 70.88 15.71 91.11
cnbg_combo_scaffold_1149 Burk15_76
Genus: Rubrivivax (69.57%)
23 27623 bp 69.88 15.33 93.59
cnbg_combo_scaffold_2237 Burk15_201
Genus: Rubrivivax (78.26%)
23 17866 bp 69.13 15.27 92.54
cnbg_combo_scaffold_653 Burk15_254
Order: Burkholderiales (81.82%)
22 29017 bp 71.44 15.67 95.85
cnbg_combo_scaffold_1950 Burk15_181
Order: Burkholderiales (90.91%)
22 25157 bp 71.43 16.29 90.45
cnbg_combo_scaffold_1043 Burk15_58
Order: Burkholderiales (95.24%)
21 20478 bp 70.36 15.86 91.77
cnbg_combo_scaffold_819 Burk15_27
Class: Betaproteobacteria (57.14%)
21 18875 bp 60.99 16.50 84.94
Displaying items 1-50 of 267 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.