ggKbase home page
Advanced Search
Search Help

SCN_Comamonadaceae_20x

SCN-stock_Burkholderiales_68_20
In projects: SCN-stock

Consensus taxonomy: Burkholderiales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCN_Unknown

Properties

Avg. coverage: 19.93 Longest contig: 284.54 Kbp Bin length: 4.85 Mbp GC content: 68.34 %
Contigs count: 108 Features count: 4447 rRNAs count: 0 tRNAs count: 45

Genome completeness

near complete RP 52 / 55 BSCG 51 / 51 ASCG 14 / 38 MC: 1

Description

Full 49

Displaying items 1-50 of 108 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cnbg_combo_scaffold_176 Acv20_1
Order: Burkholderiales (92.13%)
254 284535 bp 68.94 20.65 92.47
cnbg_combo_scaffold_48 Acv20_2
Genus: Acidovorax (51.75%)
228 255717 bp 69.16 20.76 92.43
cnbg_combo_scaffold_448 Acv20_3
Order: Burkholderiales (80.62%)
129 127353 bp 67.79 19.79 90.10
cnbg_combo_scaffold_263 Acv20_6
Genus: Acidovorax (54.46%)
112 116407 bp 66.62 20.02 91.49
cnbg_combo_scaffold_204 Acv20_8
Genus: Acidovorax (53.15%)
111 114418 bp 67.54 20.42 93.72
cnbg_combo_scaffold_412 Acv20_5
Genus: Acidovorax (51.85%)
108 118499 bp 69.56 21.44 92.40
cnbg_combo_scaffold_282 Acv20_7
Order: Burkholderiales (83.18%)
107 114692 bp 69.19 20.00 91.47
cnbg_combo_scaffold_261 Acv20_4
Genus: Acidovorax (57.84%)
102 127229 bp 69.79 21.04 93.63
cnbg_combo_scaffold_476 Acv20_9
Genus: Acidovorax (65.98%)
97 105599 bp 68.54 20.00 91.67
cnbg_combo_scaffold_489 Acv20_10
Order: Burkholderiales (85.26%)
95 102257 bp 70.32 21.10 92.50
cnbg_combo_scaffold_253 Acv20_13
Genus: Acidovorax (50.59%)
85 89607 bp 68.39 20.31 93.02
cnbg_combo_scaffold_295 Acv20_14
Order: Burkholderiales (70.89%)
79 88089 bp 66.83 20.05 91.51
cnbg_combo_scaffold_283 Acv20_17
Order: Burkholderiales (82.89%)
76 76768 bp 67.61 20.68 93.23
cnbg_combo_scaffold_257 Acv20_15
Genus: Acidovorax (59.46%)
74 79225 bp 70.17 21.21 91.80
cnbg_combo_scaffold_356 Acv20_12
Genus: Acidovorax (50.68%)
73 90765 bp 70.06 20.96 92.16
cnbg_combo_scaffold_211 Acv20_11
Order: Burkholderiales (76.39%)
72 91481 bp 70.82 21.07 93.79
cnbg_combo_scaffold_385 Acv20_16
Order: Burkholderiales (68.18%)
66 78956 bp 69.30 19.81 92.49
cnbg_combo_scaffold_270 Acv20_19
Order: Burkholderiales (76.56%)
64 65407 bp 69.09 18.95 90.22
cnbg_combo_scaffold_370 Acv20_25
Order: Burkholderiales (87.5%)
64 62463 bp 67.68 20.67 92.70
cnbg_combo_scaffold_230 Acv20_24
Genus: Acidovorax (50.82%)
61 62701 bp 67.40 20.76 91.40
cnbg_combo_scaffold_602 Acv20_22
Order: Burkholderiales (81.36%)
59 63948 bp 68.53 19.44 92.72
cnbg_combo_scaffold_207 Acv20_20
Order: Burkholderiales (66.1%)
59 65354 bp 69.69 20.08 94.23
cnbg_combo_scaffold_244 Acv20_18
Order: Burkholderiales (74.58%)
59 68433 bp 65.03 17.37 90.09
cnbg_combo_scaffold_454 Acv20_26
Order: Burkholderiales (73.68%)
57 57911 bp 68.91 20.26 90.43
cnbg_combo_scaffold_391 Acv20_33
Order: Burkholderiales (88.89%)
54 51604 bp 70.43 19.95 92.06
cnbg_combo_scaffold_334 Acv20_27
Genus: Acidovorax (51.92%)
52 57776 bp 67.97 20.25 92.67
cnbg_combo_scaffold_467 Acv20_21
Order: Burkholderiales (73.08%)
52 64599 bp 69.97 20.55 94.95
cnbg_combo_scaffold_556 Acv20_34
Genus: Acidovorax (50.98%)
51 50343 bp 65.63 18.09 87.89
cnbg_combo_scaffold_610 Acv20_23
Order: Burkholderiales (68.63%)
51 63264 bp 69.49 20.86 93.63
cnbg_combo_scaffold_400 Acv20_31
Genus: Acidovorax (66.67%)
48 52109 bp 68.68 20.75 89.82
cnbg_combo_scaffold_268 Acv20_29
Genus: Acidovorax (57.45%)
47 55490 bp 69.68 22.10 91.50
cnbg_combo_scaffold_380 Acv20_41
Order: Burkholderiales (85.11%)
47 42375 bp 64.78 18.90 87.03
cnbg_combo_scaffold_326 Acv20_37
Order: Burkholderiales (82.61%)
46 47891 bp 69.52 20.42 90.31
cnbg_combo_scaffold_373 Acv20_32
Order: Burkholderiales (82.61%)
46 51933 bp 69.01 19.53 93.05
cnbg_combo_scaffold_294 Acv20_30
Order: Burkholderiales (84.44%)
45 52291 bp 69.23 21.62 88.58
cnbg_combo_scaffold_307 Acv20_35
Order: Burkholderiales (84.44%)
45 50095 bp 66.70 17.94 82.36
cnbg_combo_scaffold_576 Acv20_39
Genus: Acidovorax (50%)
44 45290 bp 67.43 19.65 91.42
cnbg_combo_scaffold_331 Acv20_38
Order: Burkholderiales (79.55%)
44 47753 bp 68.90 19.89 93.78
cnbg_combo_scaffold_375 Acv20_40
Order: Burkholderiales (92.68%)
41 45033 bp 64.29 16.87 90.93
cnbg_combo_scaffold_496 Acv20_36
Order: Burkholderiales (85.37%)
41 48740 bp 69.82 19.98 91.71
cnbg_combo_scaffold_490 Acv20_57
Order: Burkholderiales (82.5%)
40 33538 bp 68.17 14.61 85.83
cnbg_combo_scaffold_743 Acv20_42
Order: Burkholderiales (71.79%)
39 39807 bp 67.89 14.76 83.45
cnbg_combo_scaffold_561 Acv20_52
Genus: Acidovorax (63.16%)
38 35324 bp 69.60 20.46 92.74
cnbg_combo_scaffold_674 Acv20_44
Order: Burkholderiales (86.49%)
37 38930 bp 70.96 20.50 92.17
cnbg_combo_scaffold_453 Acv20_51
Order: Burkholderiales (80%)
35 35747 bp 69.26 19.22 90.40
cnbg_combo_scaffold_431 Acv20_47
Order: Burkholderiales (88.24%)
34 37950 bp 68.86 20.99 91.98
cnbg_combo_scaffold_697 Acv20_54
Genus: Acidovorax (50%)
34 34303 bp 70.14 20.88 94.65
cnbg_combo_scaffold_713 Acv20_50
Genus: Acidovorax (58.82%)
34 36091 bp 69.49 20.97 91.39
cnbg_combo_scaffold_611 Acv20_43
Order: Burkholderiales (72.73%)
33 39435 bp 68.64 21.05 91.75
cnbg_combo_scaffold_832 Acv20_94
Order: Burkholderiales (68.75%)
32 31229 bp 64.64 18.29 90.94
connected to cnbg_combo_scaffold_2112. Rose Kantor (2/24/14)
Displaying items 1-50 of 108 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.