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SCN_Thiobacillus_53x

SCN-stock_Hydrogenophilales_63_57
In projects: SCN-stock

Consensus taxonomy: Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCN_Unknown

Properties

Avg. coverage: 56.95 Longest contig: 204.04 Kbp Bin length: 2.96 Mbp GC content: 63.04 %
Contigs count: 59 Features count: 2967 rRNAs count: 0 tRNAs count: 32

Genome completeness

partial RP 40 / 55 MC: 1 BSCG 40 / 51 ASCG 12 / 38

Description

Partial 40

Displaying items 1-50 of 59 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cnbg_combo_scaffold_222 Thio57_1
Order: Hydrogenophilales (81.96%)
194 204043 bp 63.30 66.85 91.59
cnbg_combo_scaffold_491 Thio57_2
Order: Hydrogenophilales (92.35%)
170 176708 bp 62.84 59.54 92.34
cnbg_combo_scaffold_97 Thio57_3
Order: Hydrogenophilales (74.83%)
151 167158 bp 63.72 57.23 92.51
cnbg_combo_scaffold_378 Thio57_4
Order: Hydrogenophilales (79.29%)
140 148571 bp 62.42 51.96 91.54
cnbg_combo_scaffold_324 Thio57_5
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (53.85%)
130 124250 bp 64.51 62.46 92.89
cnbg_combo_scaffold_86 Thio57_6
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (52.85%)
123 120427 bp 62.91 61.24 94.60
cnbg_combo_scaffold_528 Thio57_7
Order: Hydrogenophilales (93.04%)
115 108630 bp 63.84 59.42 93.05
cnbg_combo_scaffold_480 Thio57_8
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
110 102503 bp 62.20 54.09 87.28
cnbg_combo_scaffold_552 Thio57_9
Order: Hydrogenophilales (94.06%)
101 100969 bp 63.59 65.33 92.90
cnbg_combo_scaffold_428 Thio57_11
Order: Hydrogenophilales (81.19%)
101 98478 bp 63.21 54.43 92.57
cnbg_combo_scaffold_227 Thio57_12
Order: Hydrogenophilales (87.1%)
93 92596 bp 63.42 59.84 94.68
cnbg_combo_scaffold_499 Thio57_14
Order: Hydrogenophilales (82.61%)
92 83311 bp 63.01 55.32 86.87
cnbg_combo_scaffold_460 Thio57_10
Order: Hydrogenophilales (93.41%)
91 100056 bp 63.05 53.81 94.91
cnbg_combo_scaffold_165 Thio57_13
Order: Hydrogenophilales (72.84%)
81 84495 bp 63.72 58.56 94.50
cnbg_combo_scaffold_301 Thio57_15
Order: Hydrogenophilales (93.75%)
80 76824 bp 62.74 48.77 94.12
cnbg_combo_scaffold_287 Thio57_16
Order: Hydrogenophilales (87.34%)
79 76308 bp 63.05 54.34 89.06
cnbg_combo_scaffold_463 Thio57_17
Order: Hydrogenophilales (58.46%)
65 68215 bp 62.61 55.73 91.36
cnbg_combo_scaffold_228 Thio57_18
Order: Hydrogenophilales (95.24%)
63 65921 bp 65.29 74.74 94.24
cnbg_combo_scaffold_516 Thio57_19
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (61.67%)
60 61620 bp 63.88 59.51 91.61
cnbg_combo_scaffold_732 Thio57_22
Order: Hydrogenophilales (58.62%)
58 54278 bp 63.74 60.22 90.44
cnbg_combo_scaffold_303 Thio57_20
Order: Hydrogenophilales (82.69%)
52 54631 bp 62.18 57.59 90.03
cnbg_combo_scaffold_603 Thio57_25
Order: Hydrogenophilales (90%)
50 40063 bp 61.32 46.78 89.05
cnbg_combo_scaffold_465 Thio57_27
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (54.17%)
48 35078 bp 63.09 62.16 91.45
cnbg_combo_scaffold_280 Thio57_21
Order: Hydrogenophilales (85.11%)
47 54279 bp 64.39 61.83 93.56
cnbg_combo_scaffold_348 Thio57_23
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (62.22%)
45 46131 bp 63.50 53.73 94.99
cnbg_combo_scaffold_628 Thio57_29
Order: Hydrogenophilales (69.77%)
43 34412 bp 58.80 35.31 90.60
cnbg_combo_scaffold_439 Thio57_26
Order: Hydrogenophilales (81.4%)
43 37136 bp 64.07 56.16 90.16
cnbg_combo_scaffold_867 Thio57_30
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (62.5%)
40 31988 bp 61.82 47.79 94.77
cnbg_combo_scaffold_599 Thio57_24
Order: Hydrogenophilales (74.36%)
39 43661 bp 63.10 58.87 92.80
cnbg_combo_scaffold_886 Thio57_32
Order: Hydrogenophilales (96.88%)
32 29767 bp 61.90 52.76 91.28
cnbg_combo_scaffold_719 Thio57_28
Order: Hydrogenophilales (96.77%)
31 34508 bp 62.76 54.01 94.29
cnbg_combo_scaffold_666 Thio57_33
Order: Hydrogenophilales (86.21%)
29 26294 bp 62.88 59.94 90.72
cnbg_combo_scaffold_983 Thio57_57
Order: Hydrogenophilales (79.17%)
24 24033 bp 62.88 49.65 91.57
cnbg_combo_scaffold_642 Thio57_58
Class: Betaproteobacteria (69.57%)
23 23939 bp 61.58 45.74 92.67
cnbg_combo_scaffold_685 Thio57_35
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (52.17%)
23 22293 bp 65.42 61.55 90.15
cnbg_combo_scaffold_518 Thio57_31
Order: Hydrogenophilales (81.82%)
22 31679 bp 60.31 51.00 95.52
cnbg_combo_scaffold_1110 Thio57_34
Order: Hydrogenophilales (95.45%)
22 22799 bp 63.22 57.20 94.89
cnbg_combo_scaffold_756 Thio57_37
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (68.42%)
19 19989 bp 63.45 51.21 97.82
cnbg_combo_scaffold_1393 Thio57_59
Order: Hydrogenophilales (77.78%)
18 17741 bp 60.80 38.61 93.65
cnbg_combo_scaffold_1030 Thio57_40
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (62.5%)
16 13535 bp 65.81 61.35 92.80
cnbg_combo_scaffold_690 Thio57_36
Order: Hydrogenophilales (100%)
16 22160 bp 64.68 59.21 97.04
cnbg_combo_scaffold_893 Thio57_38
Order: Hydrogenophilales (80%)
15 15842 bp 60.34 38.45 97.71
cnbg_combo_scaffold_1303 Thio57_45
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (61.54%)
13 10431 bp 60.21 53.76 88.64
cnbg_combo_scaffold_2248 Thio57_55
Order: Hydrogenophilales (100%)
13 6396 bp 59.63 40.73 94.42
cnbg_combo_scaffold_1272 Thio57_44
Order: Hydrogenophilales (92.31%)
13 10652 bp 62.95 42.77 95.80
cnbg_combo_scaffold_1553 Thio57_39
Order: Hydrogenophilales (100%)
12 15017 bp 60.73 42.61 93.27
cnbg_combo_scaffold_2090 Thio57_41
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (58.33%)
12 13528 bp 63.75 58.24 94.31
cnbg_combo_scaffold_1069 Thio57_42
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (58.33%)
12 12968 bp 65.26 64.14 98.27
cnbg_combo_scaffold_1640 Thio57_43
Species: Thiobacillus denitrificans (100%)
11 10742 bp 57.41 25.58 87.55
cnbg_combo_scaffold_1409 Thio57_47
Order: Hydrogenophilales (72.73%)
11 9739 bp 58.65 32.32 95.12
Displaying items 1-50 of 59 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.