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SCN_Rhodanobacter_65x

SCN-stock_Xanthomonadales_68_63
In projects: SCN-stock  |  SCN_92

Consensus taxonomy: Xanthomonadales  →  Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCN_Unknown

Properties

Avg. coverage: 63.32 Longest contig: 212.48 Kbp Bin length: 3.44 Mbp GC content: 67.64 %
Contigs count: 264 Features count: 3540 rRNAs count: 0 tRNAs count: 40

Genome completeness

megabin RP 50 / 55 MC: 2 BSCG 48 / 51 MC: 13 ASCG 11 / 38

Description

Full 50

Displaying items 1-50 of 264 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cnbg_combo_scaffold_121 Rhd64_7
Genus: Rhodanobacter (52.68%)
205 212478 bp 68.33 59.12 90.55
cnbg_combo_scaffold_401 Rhd64_25
Genus: Rhodanobacter (68.09%)
141 131651 bp 68.23 56.85 90.16
cnbg_combo_scaffold_462 Rhd64_47
Genus: Rhodanobacter (60.61%)
66 64211 bp 68.95 52.67 89.87
cnbg_combo_scaffold_706 Rhd64_247a
Phylum: Proteobacteria (72%)
50 46837 bp 59.95 25.83 85.31
cnbg_combo_scaffold_922 Rhd64_46
Order: Xanthomonadales (79.59%)
49 65228 bp 67.58 55.93 94.86
cnbg_combo_scaffold_698 Rhd64_64
Order: Xanthomonadales (50%)
42 36211 bp 64.67 60.47 87.50
cnbg_combo_scaffold_1169 Rhd64_72
Genus: Rhodanobacter (52.63%)
38 28987 bp 69.90 68.39 88.38
cnbg_combo_scaffold_1096 Rhd64_250a
Order: Xanthomonadales (96.97%)
33 19209 bp 64.93 65.91 91.04
Curated in geneious, update. Rose Kantor (3/3/14)
cnbg_combo_scaffold_585 Rhd64_70
Order: Xanthomonadales (72.73%)
33 32189 bp 62.81 53.18 90.91
cnbg_combo_scaffold_876 Rhd64_248a
Order: Xanthomonadales (82.76%)
29 36945 bp 64.28 59.16 85.32
cnbg_combo_scaffold_1191 Rhd64_78
Order: Xanthomonadales (58.62%)
29 25683 bp 67.13 68.36 88.79
cnbg_combo_scaffold_1537 Rhd64_89
Genus: Rhodanobacter (51.72%)
29 22162 bp 70.07 66.62 92.47
cnbg_combo_scaffold_1453 Rhd64_81
Genus: Rhodanobacter (60.71%)
28 24495 bp 69.25 70.01 92.93
cnbg_combo_scaffold_1255 Rhd64_84
Order: Xanthomonadales (92.86%)
28 23413 bp 67.16 70.17 91.40
cnbg_combo_scaffold_1778 Rhd64_79
Genus: Rhodanobacter (50%)
28 25352 bp 66.82 65.32 90.59
cnbg_combo_scaffold_511 Rhd64_68
Species: Rhodanobacter denitrificans (85.71%)
28 32325 bp 64.34 76.29 86.90
cnbg_combo_scaffold_2096 Rhd64_77
Genus: Rhodanobacter (59.26%)
27 25714 bp 69.17 67.27 91.14
cnbg_combo_scaffold_1538 Rhd64_85
Genus: Rhodanobacter (62.96%)
27 23408 bp 67.55 70.92 86.37
cnbg_combo_scaffold_1223 Rhd64_76
Order: Xanthomonadales (92.31%)
26 27045 bp 69.85 70.55 93.88
cnbg_combo_scaffold_1158 Rhd64_67
Order: Xanthomonadales (96%)
25 32548 bp 69.53 69.74 87.19
cnbg_combo_scaffold_651 Rhd64_75
Genus: Rhodanobacter (80%)
25 27812 bp 68.60 69.19 90.89
cnbg_combo_scaffold_2573 Rhd64_82
Genus: Rhodanobacter (66.67%)
24 23931 bp 69.12 69.79 88.34
cnbg_combo_scaffold_1822 Rhd64_83
Genus: Rhodanobacter (50%)
24 23795 bp 68.76 63.90 87.91
cnbg_combo_scaffold_615 Rhd64_80
Genus: Rhodanobacter (91.3%)
23 25340 bp 66.24 85.13 91.78
cnbg_combo_scaffold_1246 Rhd64_99
Order: Xanthomonadales (95.65%)
23 20351 bp 67.66 72.69 87.82
cnbg_combo_scaffold_1433 Rhd64_95
Order: Xanthomonadales (77.27%)
22 20777 bp 66.64 60.88 85.82
cnbg_combo_scaffold_2714 Rhd64_90
Order: Xanthomonadales (63.64%)
22 21981 bp 66.92 57.40 88.61
cnbg_combo_scaffold_1789 Rhd64_92
Order: Xanthomonadales (90.91%)
22 21248 bp 68.98 64.76 88.91
cnbg_combo_scaffold_1829 Rhd64_109
Genus: Rhodanobacter (55%)
20 17621 bp 68.61 65.59 85.98
cnbg_combo_scaffold_1369 Rhd64_96
Order: Xanthomonadales (95%)
20 20650 bp 69.26 68.49 86.41
cnbg_combo_scaffold_2658 Rhd64_100
Genus: Rhodanobacter (75%)
20 20346 bp 69.45 60.35 85.64
cnbg_combo_scaffold_1128 Rhd64_91
Genus: Rhodanobacter (50%)
20 21498 bp 67.16 59.41 87.64
cnbg_combo_scaffold_658 Rhd64_87
Order: Xanthomonadales (70%)
20 23176 bp 60.09 52.50 95.01
cnbg_combo_scaffold_3556 Rhd64_110
Order: Xanthomonadales (65%)
20 17197 bp 68.57 62.93 85.95
cnbg_combo_scaffold_1484 Rhd64_104
Genus: Rhodanobacter (60%)
20 19430 bp 67.29 63.23 89.06
cnbg_combo_scaffold_2835 Rhd64_154
Genus: Rhodanobacter (52.63%)
19 12556 bp 68.21 67.23 84.72
cnbg_combo_scaffold_1678 Rhd64_103
Genus: Rhodanobacter (52.63%)
19 19583 bp 68.05 61.28 90.26
cnbg_combo_scaffold_7244 Rhd64_156
Order: Xanthomonadales (89.47%)
19 12397 bp 68.61 58.34 68.70
cnbg_combo_scaffold_3982 Rhd64_269b
Order: Xanthomonadales (72.22%)
18 14881 bp 70.08 54.96 89.21
cnbg_combo_scaffold_1610 Rhd64_151
Order: Xanthomonadales (55.56%)
18 12897 bp 63.38 61.43 87.16
cnbg_combo_scaffold_847 Rhd64_251a
Order: Xanthomonadales (72.22%)
18 16810 bp 67.17 47.03 93.28
cnbg_combo_scaffold_1620 Rhd64_158
Order: Xanthomonadales (94.44%)
18 12232 bp 67.81 69.62 93.27
cnbg_combo_scaffold_1397 Rhd64_94
Genus: Rhodanobacter (55.56%)
18 21100 bp 67.81 61.52 83.52
cnbg_combo_scaffold_3542 Rhd64_120
Order: Xanthomonadales (94.44%)
18 15903 bp 67.92 59.51 88.83
cnbg_combo_scaffold_2259 Rhd64_141
Order: Xanthomonadales (83.33%)
18 13529 bp 65.76 62.14 81.17
cnbg_combo_scaffold_3178 Rhd64_148
Order: Xanthomonadales (88.24%)
17 13144 bp 69.05 65.31 86.96
cnbg_combo_scaffold_3236 Rhd64_101
Genus: Rhodanobacter (64.71%)
17 20012 bp 68.97 67.77 86.45
cnbg_combo_scaffold_890 Rhd64_114
Order: Xanthomonadales (82.35%)
17 16422 bp 68.75 71.15 88.03
cnbg_combo_scaffold_689 Rhd64_249a
Class: Gammaproteobacteria (58.82%)
17 22163 bp 59.74 51.09 87.13
cnbg_combo_scaffold_9456 Rhd64_173
Genus: Dyella (52.94%)
17 11665 bp 68.74 60.63 94.38
Displaying items 1-50 of 264 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.