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SCN_Phage_general

SCN-stock_Proteobacteria_63_50
In projects: SCN-stock  |  phage-plasmid-virus-protein-families

Consensus taxonomy: Proteobacteria  →  Bacteria

Taxonomy override: Mobile_element

Metagenomic Context

Parent: SCN_Unknown

Properties

Avg. coverage: 49.77 Longest contig: 50.12 Kbp Bin length: 798.94 Kbp GC content: 62.61 %
Contigs count: 49 Features count: 1032 rRNAs count: 0 tRNAs count: 5

Genome completeness

RP 0 / 55 BSCG 0 / 51 ASCG 0 / 38
Displaying 49 items
contig # features sequence size GC content (%) Cov Coding Density (%)
cnbg_combo_scaffold_469 PhgGen_42
Order: Rhizobiales (57.33%)
75 50124 bp 63.87 15.16 94.51
cnbg_combo_scaffold_646 PhgGen_2
Class: Alphaproteobacteria (56.9%)
58 40359 bp 66.22 17.64 94.80
cnbg_combo_scaffold_430 PhgGen_1
Genus: Acidovorax (51.85%)
54 45812 bp 65.77 35.53 94.85
cnbg_combo_scaffold_727 PhgGen_6 53 27242 bp 65.68 17.88 91.84
cnbg_combo_scaffold_456 PhgGen_3
Phylum: Proteobacteria (56.86%)
51 36151 bp 66.21 18.84 93.07
cnbg_combo_scaffold_577 PhgGen_5
Phylum: Proteobacteria (60%)
45 27805 bp 61.89 13.95 95.45
cnbg_combo_scaffold_785 PhgGen_39
Order: Burkholderiales (89.19%)
37 32216 bp 60.32 15.59 88.94
cnbg_combo_scaffold_880 PhgGen_15 34 16045 bp 46.99 14.15 87.50
cnbg_combo_scaffold_1472 PhgGen_49c
Order: Xanthomonadales (67.65%)
34 23381 bp 67.45 47.25 88.70
cnbg_combo_scaffold_991 PhgGen_8
Domain: Bacteria (50%)
34 23182 bp 68.72 12.91 89.75
cnbg_combo_scaffold_1194 PhgGen_18
Domain: Bacteria (50%)
32 15135 bp 61.91 15.16 85.91
cnbg_combo_scaffold_717 PhgGen_46a
Genus: Thiomonas (61.29%)
31 24480 bp 61.81 100.53 72.98
Maybe circular Rose Kantor (3/31/14)
cnbg_combo_scaffold_621 PhgGen_7
Class: Betaproteobacteria (64.29%)
28 26420 bp 61.78 174.08 87.38
cnbg_combo_scaffold_1850 PhgGen_20 26 14892 bp 64.09 12.72 70.15
cnbg_combo_scaffold_957 PhgGen_21 26 14730 bp 67.78 16.65 97.27
cnbg_combo_scaffold_813 PhgGen_13
Order: Sphingomonadales (91.3%)
23 19065 bp 66.02 21.14 89.58
cnbg_combo_scaffold_1799 PhgGen_11
Class: Betaproteobacteria (77.27%)
22 21039 bp 54.92 9.61 93.26
cnbg_combo_scaffold_943 PhgGen_19
Class: Betaproteobacteria (66.67%)
21 14940 bp 59.12 80.74 86.87
cnbg_combo_scaffold_1122 PhgGen_16
Order: Burkholderiales (50%)
20 15771 bp 59.50 183.68 89.21
cnbg_combo_scaffold_796 PhgGen_12
Class: Betaproteobacteria (52.63%)
19 20037 bp 59.01 102.25 89.89
cnbg_combo_scaffold_714 PhgGen_10
Phylum: Proteobacteria (57.89%)
19 21130 bp 62.96 22.72 87.29
cnbg_combo_scaffold_770 PhgGen_49a
Order: Rhodocyclales (52.63%)
19 22788 bp 68.51 13.71 84.52
cnbg_combo_scaffold_919 PhgGen_45
Species: Pseudomonas aeruginosa (83.33%)
18 15373 bp 65.27 13.39 97.50
cnbg_combo_scaffold_742 PhgGen_47
Order: Burkholderiales (100%)
18 20174 bp 62.94 29.00 79.96
cnbg_combo_scaffold_3085 PhgGen_23
Class: Betaproteobacteria (94.44%)
18 9560 bp 53.83 101.62 87.74
cnbg_combo_scaffold_1037 PhgGen_17
Species: Cupriavidus metallidurans (52.94%)
17 15595 bp 62.71 125.42 81.26
cnbg_combo_scaffold_776 PhgGen_14 15 18974 bp 54.47 12.51 87.17
cnbg_combo_scaffold_1206 PhgGen_22
Phylum: Proteobacteria (50%)
14 12302 bp 57.09 75.08 96.52
cnbg_combo_scaffold_1920 PhgGen_29
Phylum: Proteobacteria (61.54%)
13 7603 bp 53.81 92.49 81.24
cnbg_combo_scaffold_1192 PhgGen_44
Class: Betaproteobacteria (61.54%)
13 13375 bp 62.98 9.36 89.25
cnbg_combo_scaffold_4279 PhgGen_50b
Class: Alphaproteobacteria (58.33%)
12 9863 bp 68.08 10.40 94.75
cnbg_combo_scaffold_3858 PhgGen_50a
Phylum: Actinobacteria (54.55%)
11 7466 bp 69.37 10.45 94.87
cnbg_combo_scaffold_4093 PhgGen_36 11 5721 bp 68.69 11.08 92.24
cnbg_combo_scaffold_2480 PhgGen_25 11 8448 bp 67.77 11.48 87.64
cnbg_combo_scaffold_2003 PhgGen_41
Order: Burkholderiales (70%)
10 7064 bp 58.76 18.20 81.37
cnbg_combo_scaffold_2364 PhgGen_33
Order: Burkholderiales (66.67%)
9 6131 bp 63.84 384.23 76.04
cnbg_combo_scaffold_4366 PhgGen_43
Order: Burkholderiales (55.56%)
9 5449 bp 64.75 8.41 97.50
cnbg_combo_scaffold_1805 PhgGen_28
Species: Acidiphilium sp. PM (75%)
8 7794 bp 62.34 258.42 76.06
cnbg_combo_scaffold_3267 Rhsp10_146
Class: Alphaproteobacteria (62.5%)
8 6735 bp 71.09 10.78 95.19
cnbg_combo_scaffold_2618 PhgGen_46b
Order: Hydrogenophilales (50%)
8 5639 bp 57.67 398.81 95.60
cnbg_combo_scaffold_2145 PhgGen_27
Phylum: Bacteroidetes (62.5%)
8 7839 bp 38.58 30.73 81.44
cnbg_combo_scaffold_2118 PhgGen_48
Species: Ralstonia pickettii (83.33%)
6 6712 bp 64.02 24.70 59.62
connected to cnbg_combo_scaffold_742. Rose Kantor (2/24/14)
cnbg_combo_scaffold_3031 PhgGen_49b
Species: Candidatus Symbiobacter mobilis (50%)
6 9402 bp 61.73 123.94 93.08
cnbg_combo_scaffold_2776 PhgGen_38a
Domain: Bacteria (50%)
6 5387 bp 58.57 21.57 92.11
cnbg_combo_scaffold_4755 PhgGen_31
Class: Gammaproteobacteria (50%)
6 7261 bp 55.74 94.30 88.87
cnbg_combo_scaffold_3172 PhgGen_26
Order: Hydrogenophilales (80%)
5 8149 bp 65.15 146.35 94.98
cnbg_combo_scaffold_2092 PhgGen_32
Species: Burkholderiales bacterium GJ-E10 (50%)
4 6803 bp 63.71 122.56 95.43
cnbg_combo_scaffold_2431 PhgGen_35
Species: Novosphingobium nitrogenifigens (75%)
4 5989 bp 61.90 50.29 98.03
cnbg_combo_scaffold_2773 PhgGen_37
Class: Betaproteobacteria (100%)
3 5389 bp 55.09 16.26 95.92
Displaying 49 items

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.