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SCN_Plasmid_general

SCN-stock_Proteobacteria_63_97
In projects: SCN-stock  |  phage-plasmid-virus-protein-families

Consensus taxonomy: Proteobacteria  →  Bacteria

Taxonomy override: Mobile_element

Metagenomic Context

Parent: SCN_Unknown

Properties

Avg. coverage: 96.53 Longest contig: 215.90 Kbp Bin length: 1.80 Mbp GC content: 63.11 %
Contigs count: 74 Features count: 2015 rRNAs count: 0 tRNAs count: 1

Genome completeness

RP 0 / 55 BSCG 0 / 51 ASCG 0 / 38
Displaying items 1-50 of 74 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cnbg_combo_scaffold_79 Plasmid_gen_1
Phylum: Proteobacteria (50.81%)
248 215895 bp 65.62 22.33 89.54
cnbg_combo_scaffold_105 Plasmid_gen_3
Phylum: Proteobacteria (52.94%)
119 105012 bp 65.54 64.90 89.91
cnbg_combo_scaffold_279 Plasmid_gen_4
Order: Burkholderiales (72.38%)
105 95277 bp 65.43 52.35 89.40
cnbg_combo_scaffold_308 Plasmid_gen_5
Class: Betaproteobacteria (52.94%)
85 80883 bp 64.07 18.06 90.43
cnbg_combo_scaffold_474 Plasmid_gen_9
Class: Betaproteobacteria (57.14%)
63 48107 bp 55.75 318.01 90.62
cnbg_combo_scaffold_306 Plasmid_gen_8
Phylum: Proteobacteria (67.74%)
62 50110 bp 65.28 96.39 89.62
cnbg_combo_scaffold_338 Plasmid_gen_10
Species: Ralstonia sp. 5_2_56FAA (51.67%)
60 47250 bp 61.45 317.15 93.73
cnbg_combo_scaffold_645 Plasmid_gen_12
Domain: Bacteria (83.64%)
55 44363 bp 61.67 53.75 91.36
cnbg_combo_scaffold_309 Plasmid_gen_7
Class: Betaproteobacteria (52%)
50 54199 bp 63.53 20.57 90.99
cnbg_combo_scaffold_939 Plasmid_gen_17
Class: Betaproteobacteria (54.55%)
44 31731 bp 63.02 210.22 86.91
cnbg_combo_scaffold_360 Plasmid_gen_6
Order: Burkholderiales (81.4%)
43 57474 bp 62.20 200.18 92.76
cnbg_combo_scaffold_409 Plasmid_gen_14 43 39778 bp 65.18 88.89 87.71
cnbg_combo_scaffold_738 Plasmid_gen_15
Class: Alphaproteobacteria (90.48%)
42 36259 bp 65.60 13.82 84.65
cnbg_combo_scaffold_636 Plasmid_gen_13
Class: Betaproteobacteria (56.1%)
41 40807 bp 63.87 225.36 89.31
cnbg_combo_scaffold_850 Plasmid_gen_16
Class: Betaproteobacteria (74.29%)
35 34726 bp 64.10 242.71 92.30
cnbg_combo_scaffold_695 Plasmid_gen_23
Class: Betaproteobacteria (68.57%)
35 25714 bp 59.63 140.51 88.74
cnbg_combo_scaffold_767 Plasmid_gen_19
Species: Thauera terpenica (55.88%)
34 30053 bp 56.68 113.09 93.56
cnbg_combo_scaffold_557 Plasmid_gen_20
Genus: Sphingobium (75%)
32 29395 bp 63.30 42.27 82.71
cnbg_combo_scaffold_590 Plasmid_gen_22
Domain: Bacteria (63.33%)
30 27191 bp 60.34 36.53 91.12
cnbg_combo_scaffold_620 Plasmid_gen_21
Species: Acidovorax sp. JS42 (62.07%)
29 28195 bp 65.00 98.00 87.54
cnbg_combo_scaffold_1219 Plasmid_gen_27
Species: Acidovorax sp. JS42 (65.52%)
29 21331 bp 64.49 86.94 91.67
cnbg_combo_scaffold_543 Plasmid_gen_18
Order: Burkholderiales (92%)
25 30289 bp 65.07 18.50 90.10
cnbg_combo_scaffold_1103 Plasmid_gen_26
Order: Sphingomonadales (80%)
25 21774 bp 63.31 24.14 83.91
cnbg_combo_scaffold_874 Plasmid_gen_74a
Order: Burkholderiales (76%)
25 19407 bp 62.45 17.46 91.19
cnbg_combo_scaffold_1182 Plasmid_gen_31
Class: Betaproteobacteria (72%)
25 17362 bp 63.38 177.89 89.92
cnbg_combo_scaffold_833 Plasmid_gen_25
Class: Gammaproteobacteria (50%)
24 23282 bp 65.63 152.24 94.26
cnbg_combo_scaffold_622 Plasmid_gen_55
Species: Ralstonia pickettii (79.17%)
24 24952 bp 65.16 22.06 92.55
cnbg_combo_scaffold_1254 Plasmid_gen_28
Genus: Pseudomonas (56.52%)
23 19314 bp 65.50 200.31 76.19
cnbg_combo_scaffold_618 Plasmid_gen_70
Class: Gammaproteobacteria (77.27%)
22 32254 bp 59.95 17.46 87.36
cnbg_combo_scaffold_887 Plasmid_gen_34
Class: Betaproteobacteria (50%)
22 15978 bp 57.16 109.71 83.29
Circular Rose Kantor (3/31/14)
cnbg_combo_scaffold_841 Plasmid_gen_30
Order: Burkholderiales (52.38%)
21 17975 bp 66.46 15.43 91.96
cnbg_combo_scaffold_1129 Plasmid_gen_29
Species: Pseudomonas aeruginosa (50%)
20 18312 bp 62.58 163.47 96.30
cnbg_combo_scaffold_1176 Plasmid_gen_71
Order: Xanthomonadales (65%)
20 20846 bp 66.68 15.49 87.53
cnbg_combo_scaffold_2098 Plasmid_gen_36
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (52.63%)
19 15234 bp 58.28 284.93 99.07
cnbg_combo_scaffold_1019 Plasmid_gen_57
Genus: Devosia (57.89%)
19 13698 bp 58.84 12.67 88.83
cnbg_combo_scaffold_731 Plasmid_gen_68a
Species: Comamonas testosteroni (50%)
18 20587 bp 61.90 20.20 93.60
cnbg_combo_scaffold_1495 Plasmid_gen_68c
Domain: Bacteria (58.82%)
17 9246 bp 49.91 32.77 80.34
cnbg_combo_scaffold_1033 Plasmid_gen_38
Phylum: Proteobacteria (81.25%)
16 13506 bp 62.42 89.32 81.83
cnbg_combo_scaffold_2040 Plasmid_gen_49
Class: Betaproteobacteria (56.25%)
16 9746 bp 62.95 123.77 83.60
cnbg_combo_scaffold_1157 Plasmid_gen_42
Species: Ralstonia sp. 5_2_56FAA (53.33%)
15 11851 bp 63.30 363.01 84.12
cnbg_combo_scaffold_937 Plasmid_gen_37
Class: Betaproteobacteria (66.67%)
15 15017 bp 62.95 30.09 82.61
cnbg_combo_scaffold_1766 Plasmid_gen_59a
Class: Betaproteobacteria (73.33%)
15 12287 bp 59.62 91.68 83.92
cnbg_combo_scaffold_2064 Plasmid_gen_69
Order: Hydrogenophilales (85.71%)
14 10540 bp 57.45 64.31 98.54
cnbg_combo_scaffold_1232 Plasmid_gen_44
Class: Betaproteobacteria (57.14%)
14 11050 bp 58.24 125.93 74.85
cnbg_combo_scaffold_1824 Plasmid_gen_45
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (53.85%)
13 10636 bp 65.40 150.69 99.93
cnbg_combo_scaffold_1314 Plasmid_gen_40
Species: Polaromonas naphthalenivorans (53.85%)
13 12638 bp 63.26 48.04 97.49
cnbg_combo_scaffold_2862 Plasmid_gen_67b
Genus: Thiomonas (53.85%)
13 7366 bp 58.50 39.41 70.13
cnbg_combo_scaffold_1691 Plasmid_gen_51
Class: Gammaproteobacteria (50%)
12 8326 bp 59.27 152.10 91.84
cnbg_combo_scaffold_2381 Plasmid_gen_52
Genus: Xanthomonas (63.64%)
11 8199 bp 60.84 604.37 88.04
cnbg_combo_scaffold_1156 Plasmid_gen_41
Order: Burkholderiales (63.64%)
11 12271 bp 63.93 134.35 88.62
Displaying items 1-50 of 74 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.