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SCN18_10_11_15_R1_P_scaffold_3515_1

Organism: SCN18_10_11_15_R1_P_Stenotrophomonas_69_7

near complete RP 45 / 55 MC: 3 BSCG 42 / 51 MC: 7 ASCG 11 / 38 MC: 2
Location: 3..929

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-24 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00037BAB76 similarity UNIREF
DB: UNIREF100
  • Identity: 73.1
  • Coverage: 308.0
  • Bit_score: 433
  • Evalue 1.10e-118
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:AHY60476.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 75.4
  • Coverage: 305.0
  • Bit_score: 433
  • Evalue 1.50e-118
ECF subfamily RNA polymerase sigma-70 factor similarity KEGG
DB: KEGG
  • Identity: 69.3
  • Coverage: 306.0
  • Bit_score: 402
  • Evalue 5.70e-110

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Taxonomy

SCNpilot_P_inoc_Stenotrophomonas_69_27 → Stenotrophomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 927
ATCGGCGACGACCTGCTGCGGCTGTTGTTCGTCGCCTGCCACCCGGTACTGCCGGCCGATGCGCGGGTGGCGCTGACCCTGCGCCTGCTGTGCGGCCTGAGCACGGCCGAGATCGCGCGTGCGTTCCTGCTGCCGGAACCGACCATCGCCCAGCGCATCGTCCGCGCCAAGCGCACCCTGGCCGAGCGCGGCGTGGCGTTCGAGGTGCCGCGACGGCAGGCGCTGCCGCCGCGGCTGCGCTCGGTGCTGGAGGTGGTCTACCTGGTCTTCAACGAAGGCTATGCGGCCAGTAATGGCGAGGACTGGATGCGCCCGGCGCTGTGCGAGGAGGCACTGCGCCTGGGCAGGGTGCTGGCCGGGCTGATGCCCGTGTCGGCGCCGGTGCTTGGGCTGCTGGCATTGATGGAACTGCAGGCCTCGCGGATGAATGCGCGTACCGGCGCCGATGGCGGCGCGGTGCTGCTCATGGAACAGGACCGCAGCCGCTGGGACTGGCTGCAGATCGGCCGCGGCCAGGTGGCGCTGGAGAAGGCGCTGGCCCTCGGTGGCGACGACGATGCCTATGTACTGCAGGCGGCCATCGCCGAATGCCACGCGCGGGCGCGCCGCGCCGCGCAGACCGACTGGTCGCGCATCGCGCAGCTGTACGCGCGCCTGATGGCGGTGATGCCCTCGCCGGTGATCGAACTGAACCGCACCGTCGCGGTGGCGCGCGCACAGGGAGCGCAGGCCGCGTGGCCGCTGCTGGAAGCCCTGCAGGAAGACGGCCGGCTGGACGGCTACGCACCGCTGCATGCGGTGCGCGGCGACCTGCTCGAGCAGCTGGGCCGTCGCGGCGAAGCGCGCGCCGCCTTCGAGCGCGCCGCCGGCCTGAGCGGCAATGGCCGCGAGCGCGCCGCGCTGTTGGCCCGCGCGGGGAAAATGTAG
PROTEIN sequence
Length: 309
IGDDLLRLLFVACHPVLPADARVALTLRLLCGLSTAEIARAFLLPEPTIAQRIVRAKRTLAERGVAFEVPRRQALPPRLRSVLEVVYLVFNEGYAASNGEDWMRPALCEEALRLGRVLAGLMPVSAPVLGLLALMELQASRMNARTGADGGAVLLMEQDRSRWDWLQIGRGQVALEKALALGGDDDAYVLQAAIAECHARARRAAQTDWSRIAQLYARLMAVMPSPVIELNRTVAVARAQGAQAAWPLLEALQEDGRLDGYAPLHAVRGDLLEQLGRRGEARAAFERAAGLSGNGRERAALLARAGKM*