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SCN18_25_1_16_R1_B_scaffold_1902_2

Organism: SCN18_25_1_16_R1_B_Burkholderiales_68_8

near complete RP 43 / 55 MC: 2 BSCG 45 / 51 MC: 4 ASCG 10 / 38
Location: comp(967..1623)

Top 3 Functional Annotations

Value Algorithm Source
3-isopropylmalate dehydratase small subunit (EC:4.2.1.33) similarity KEGG
DB: KEGG
  • Identity: 94.0
  • Coverage: 218.0
  • Bit_score: 422
  • Evalue 6.40e-116
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031, ECO:0000313|EMBL:CDM24399.1}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031, ECO:0000313|EMBL:CDM24399.1};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.0
  • Coverage: 218.0
  • Bit_score: 422
  • Evalue 3.20e-115
3-isopropylmalate dehydratase small subunit n=2 Tax=Alcaligenes xylosoxydans xylosoxydans RepID=R4XT87_ALCXX similarity UNIREF
DB: UNIREF100
  • Identity: 80.0
  • Coverage: 210.0
  • Bit_score: 348
  • Evalue 3.20e-93

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Taxonomy

SCNpilot_BF_INOC_Bordetella_67_10 → SCNpilot_BF_INOC_Bordetella_67_10 → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 657
ATGCAAGCCTTCACCACGCACCGGGGCCTGGTGGCCCCCCTGGACCGGGAAAACGTCGATACCGACCTGATCATCCCCAAGCAGTTCCTGAAGTCCATCAAGCGCACGGGCTTCGGCCCCAACCTGTTCGACGAACTGCGCTACCTGGACCACGGCGAGCCCGGCATGGACAACAGCCGCCGGCCGCAGAACCCGGATTTCGTGCTGAACCAGCCGCGCTACCAGGGCGCCTCGATCCTGCTGTGCCGCAAGAACTTCGGCTGCGGCTCCAGCCGCGAGCACGCGCCCTGGGCCCTGCAGCAGTACGGCTTCCGCGCGCTGATCGCGCCGTCCTACGCCGACATCTTCTTCAACAACAGCTTCAAGAACGGCCTGCTGCCCATCGTGCTGCCCGAGGCCGTGGTGGCCCGCCTGTTCCAGGCCGTCGAGGCCGCGCCGGGCTACGAGCTGACCGTGGACCTGGCCGGACAGCGGGTGACCGCGCCCGACGGCGAGTCCTGGTCCTTCGAGATCGACGCCTACCGCAAGGAATCGCTGCTGAAGGGCCTGGACGAGATCGGCCAGACCCTGCTGCACGCTGGCGAAATTCGCGCCTTCGAGGCGCGGCGCCTGGCGCAACACCCCTGGCTGGCGCGCGAGAATCCCGGCGGCCTTTGA
PROTEIN sequence
Length: 219
MQAFTTHRGLVAPLDRENVDTDLIIPKQFLKSIKRTGFGPNLFDELRYLDHGEPGMDNSRRPQNPDFVLNQPRYQGASILLCRKNFGCGSSREHAPWALQQYGFRALIAPSYADIFFNNSFKNGLLPIVLPEAVVARLFQAVEAAPGYELTVDLAGQRVTAPDGESWSFEIDAYRKESLLKGLDEIGQTLLHAGEIRAFEARRLAQHPWLARENPGGL*