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SCN18_25_8_15_R2_B_scaffold_3559_7

Organism: SCN18_25_8_15_R2_B_Microbacterium_70_11

near complete RP 51 / 55 MC: 3 BSCG 51 / 51 MC: 8 ASCG 13 / 38 MC: 4
Location: comp(5526..6194)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoE n=1 Tax=Microbacterium yannicii RepID=UPI0003195C84 similarity UNIREF
DB: UNIREF100
  • Identity: 82.6
  • Coverage: 235.0
  • Bit_score: 370
  • Evalue 7.90e-100
ECF RNA polymerase sigma factor SigR {ECO:0000313|EMBL:KJL35648.1}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 85.1
  • Coverage: 221.0
  • Bit_score: 366
  • Evalue 2.10e-98
sigH; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog similarity KEGG
DB: KEGG
  • Identity: 81.1
  • Coverage: 228.0
  • Bit_score: 361
  • Evalue 1.40e-97

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Taxonomy

CN-SCN_Microbacterium_18x → Microbacterium → Actinomycetales → Actinobacteridae → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 669
ATGATCGCCACCCTGGAACGCCCCGCAGCGGCGCCCCCGGCGAGCTCCGAGGGGCCGCACGTAGACTGGCTGCTGATGAACGACGAGGCACCGGCCGCCAGCGACCCGCGGACCCAGTTCGAAGAGCAGGCCCTTCCCTTCATGGACCAGCTCTACGCGGCTGCCATGCGGATGACGCGCAATCCCGCTGACGCCGCCGATCTGGTGCAGGAGACGTTCGTGAAGGCGTTCGCCTCGTGGAAGACCTTCACGCAGGGGACCAACCTCAAGGCGTGGCTCTACCGCATCCTCACCAACACCTACATCAACACGTATCGCAAGAAGCAGCGAGAGCCCTATCAGGGCACCATCGACGACCTCGAGGATTGGCAGCTCGGGGGAGCGGAGTCGACGACGGCGACGAGCACGCGCTCGGCCGAGGCGGAGGCGATCGACCGGATGCCCGCATCCGTCGTGAAGGACGCCCTGCAGTCGATCCCGGAGGATTTCCGGCTGGCGGTGTACCTCGCGGATGTCGAGGGCTTCGCCTACCAGGAGATCGCCGACATCATGAAGACACCCATCGGCACGGTCATGAGCCGTCTGCACCGTGGCAGGCGCATGCTTCGTGAGCTGCTGGCCGAGTACGCACAGGAGCGCGGCATCGCCGCGACAGGGAGCACGAGATGA
PROTEIN sequence
Length: 223
MIATLERPAAAPPASSEGPHVDWLLMNDEAPAASDPRTQFEEQALPFMDQLYAAAMRMTRNPADAADLVQETFVKAFASWKTFTQGTNLKAWLYRILTNTYINTYRKKQREPYQGTIDDLEDWQLGGAESTTATSTRSAEAEAIDRMPASVVKDALQSIPEDFRLAVYLADVEGFAYQEIADIMKTPIGTVMSRLHRGRRMLRELLAEYAQERGIAATGSTR*