ggKbase home page

SCN18_25_8_15_R2_B_scaffold_1365_23

Organism: SCN18_25_8_15_R2_B_SCNPILOT_EXPT_1000_BF_Devosia_62_26-related_62_9

near complete RP 49 / 55 BSCG 49 / 51 ASCG 13 / 38
Location: 17902..18927

Top 3 Functional Annotations

Value Algorithm Source
type VI secretion protein n=1 Tax=Sinorhizobium medicae RepID=UPI00037393DF similarity UNIREF
DB: UNIREF100
  • Identity: 74.1
  • Coverage: 336.0
  • Bit_score: 500
  • Evalue 1.00e-138
Type II secretion system protein E {ECO:0000313|EMBL:KFC70202.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.7
  • Coverage: 341.0
  • Bit_score: 650
  • Evalue 1.10e-183
virb1; Type IV secretion system protein virB11 similarity KEGG
DB: KEGG
  • Identity: 76.0
  • Coverage: 325.0
  • Bit_score: 499
  • Evalue 4.90e-139

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

scnpilot_dereplicated_Plasmid_Rhizobiales_1 → scnpilot_dereplicated_Plasmid_Rhizobiales_1 → scnpilot_dereplicated_Plasmid_Rhizobiales_1 → scnpilot_dereplicated_Plasmid_Rhizobiales_1 → scnpilot_dereplicated_Plasmid_Rhizobiales_1 → Plasmid-like

Sequences

DNA sequence
Length: 1026
ATGTCCTCAGCCACATCGATGTTGCCAACCCTGCTCTATGTTGTCGAACAGGCATTGGAGCCCCTTCGAAGCCTGCTCGACGACCCGGCCGTCGTTGAAATTTCCGTCAACAAGCCAGGTCAGGTTTTCGTCGAGCGCATAGGTCAAGCCCATATGGAGTTTCACTCCATTCCGGCGATGACGGCAGAGGCGATCAGCCAGATAGCGCAGCGGGTCGCTGCCTATACCAACCAGTTCGTCAACAGTGAAAGGCCTTTGTTGAGCGCCGCCCTGCCAACCGGGGAGCGCATTCAAGTCGTCTTGCCGCCGGCCGCCCCCGATGGCGGAACGCTCTCGATCCGAAAGCAAGTGACCCAACATTTTACCCTGGAGGAATACCGGGACAATGGCTCGCTCGACAAGGTTGTCGTTTCGCTTGGCGGGCTCTCACAGCTTGATCACGACTTAATCGGCCATCTTCAGGCGCAGCGGATTTATGAGTTTCTTGATACCGCCATCCGCAATCGCGTCTCCATCCTGATCAGTGGCGGTACGTCGACCGGGAAAACGACATTTCTCAATGCGTGCCTCAAAAGTGTCGATCCCAACGAGCGGATTTTGACGCTCGAGGATACGCGCGAGTTGTTCCCAACCCAAAAAAATATCGTTCACTTGATCGCCTCAAAGGGCGATCAGGGAACCGCCAATGTCACGATTCAAAGCCTGCTCGAATCTTCCCTGCGTATGCGCCCAGACCGGCTTTTCGTCGGCGAAATTCGTGGTGCAGAGGCCTTTACCTTCTTGCGCGCCATCAACACCGGGCACCCCGGCTCGATGTCGACAGTCCACGCGGATACCCCTCAGGGCGCCTATGAGCAGCTGGTGATGATGATCATGCAGGGCGGCATGGCAGGCTCCTTCAGTAAGGCAGATTTGCTGTCATACCTGCACATGGTTATCCCAGTCGTGATCCAGCTTCGGCGCGACGGCGGCAAGCGTGGCGTTTCGGAAATCTTCTTCGCGCGGCAGCATGACCATGCTGTTTAG
PROTEIN sequence
Length: 342
MSSATSMLPTLLYVVEQALEPLRSLLDDPAVVEISVNKPGQVFVERIGQAHMEFHSIPAMTAEAISQIAQRVAAYTNQFVNSERPLLSAALPTGERIQVVLPPAAPDGGTLSIRKQVTQHFTLEEYRDNGSLDKVVVSLGGLSQLDHDLIGHLQAQRIYEFLDTAIRNRVSILISGGTSTGKTTFLNACLKSVDPNERILTLEDTRELFPTQKNIVHLIASKGDQGTANVTIQSLLESSLRMRPDRLFVGEIRGAEAFTFLRAINTGHPGSMSTVHADTPQGAYEQLVMMIMQGGMAGSFSKADLLSYLHMVIPVVIQLRRDGGKRGVSEIFFARQHDHAV*