ggKbase home page

SCN18_25_8_15_R2_B_scaffold_7892_5

Organism: SCN18_25_8_15_R2_B_SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10_40_9

near complete RP 52 / 55 MC: 1 BSCG 50 / 51 MC: 2 ASCG 13 / 38
Location: 2613..3791

Top 3 Functional Annotations

Value Algorithm Source
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y2E0_PEDHD similarity UNIREF
DB: UNIREF100
  • Identity: 80.9
  • Coverage: 393.0
  • Bit_score: 647
  • Evalue 6.00e-183
Multidrug transporter AcrB {ECO:0000313|EMBL:ETZ23893.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 81.2
  • Coverage: 393.0
  • Bit_score: 650
  • Evalue 1.30e-183
hydrophobe/amphiphile efflux-1 (HAE1) family transporter similarity KEGG
DB: KEGG
  • Identity: 80.9
  • Coverage: 393.0
  • Bit_score: 647
  • Evalue 1.70e-183

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10 → SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10 → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 1179
ATGTTCAATAAATTCATACAAAGGCCGGTCCTTTCCATAGTAATATCTCTTATCATTGTTTTCCTCGGGATACTATCCCTGTTAAAATTACCGGTAACGCAATTTCCATCCATCTCTCCTCCTAAAGTAAATGTTACAGCAGAATATCCCGGCGCCAATGGGGAGTTGATGACAAAAGCAGTCATTATTCCGCTTGAACGTGCTATTAATGGTGTGCCGGGCATGAAGTATATGGATGCGGATGCGGGTAATGACGGCGAAGCAAGCATACAGGTGGTATTTGAATTGGGAACCGATCCCAATATCGCCGCGGTAAGCGTTCAAAACCGTATTGCTTCCGTTATTAATAAATTACCACCACTGGTGGTAAGAGAAGGCGTAAAAATAACCAGGGAAGAATCGAACATGCTGATGTACATCAACCTGTATAGTGATGATTCCACCTTAGAGCAAAACTTTCTTTTCAATTTTGCCGATTTAAATATCCTTTCAGAATTAAAAAGAGTTGACGGCGTTGGCTTTGCCGATGTGCTCGGCGACAGGGAGTATTCAATGAGGGTATGGTTGAAGCCTGACAGAATGCTGGCTTATAAAATTTCATCTGATGATGTAATGAAAGCACTGGATGAACAAAGCCTTGAAGCATCGCCCGGCCGGTTAGGAGAAAGTTCGGGAAAACAATCGCAGGCATTTGAGTATGTATTAAAATATGCAGGAAGATATACTACAAAAGAAGAGTATGAAAACATTGTATTAAGAGCTTCTTCTGACGGAGAATTGTTGCATTTAAAAGACGTGGCTGATGTTGAATTTGGAAGTACATTCTATGACCTGTATTCAACGCTTAACGGAAAACCATCTGCCGCCATCGTTGTAAAGCAGTCTTATGGTAGTAATGCAAGGGAAGTTATTAAGAATATAAAAAAGAAGATGGAGGAAATACAGGCAGGCAGTTTTCCCAAAAGCATACATTACGAATTGAGCTACGATGTTTCAAAGTTCCTCGATGCTTCTATAGAAAAAGTTGTTCATACACTGGTAGAGGCATTCCTTCTTGTAAGCTTTGTGGTGTTCCTGTTTTTGGGCGATTGGCGCTCAACACTTATTCCTGCACTGGCAGTGCCGGTTTCATTGATTGGCGCATTTTTCTTTATGCAATTATTCGGCATTACGGTTAAC
PROTEIN sequence
Length: 393
MFNKFIQRPVLSIVISLIIVFLGILSLLKLPVTQFPSISPPKVNVTAEYPGANGELMTKAVIIPLERAINGVPGMKYMDADAGNDGEASIQVVFELGTDPNIAAVSVQNRIASVINKLPPLVVREGVKITREESNMLMYINLYSDDSTLEQNFLFNFADLNILSELKRVDGVGFADVLGDREYSMRVWLKPDRMLAYKISSDDVMKALDEQSLEASPGRLGESSGKQSQAFEYVLKYAGRYTTKEEYENIVLRASSDGELLHLKDVADVEFGSTFYDLYSTLNGKPSAAIVVKQSYGSNAREVIKNIKKKMEEIQAGSFPKSIHYELSYDVSKFLDASIEKVVHTLVEAFLLVSFVVFLFLGDWRSTLIPALAVPVSLIGAFFFMQLFGITVN