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SCNpilot_cont_1000_bf_UNK

In projects: SCNPILOT_CONT_1000_BF

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 10.11 Longest contig: 203.91 Kbp Bin length: 71.22 Mbp GC content: 59.17 %
Contigs count: 26361 Features count: 88849 rRNAs count: 12 tRNAs count: 107

Genome completeness

megabin RP 53 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 21 / 38 MC: 17
Displaying items 1-50 of 26361 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_1000_bf_scaffold_49962 3 1023 bp 52.30 5.38 117.01
SCNpilot_cont_1000_bf_scaffold_42450 2 1187 bp 55.01 6.32 115.00
SCNpilot_cont_1000_bf_scaffold_49349 3 1036 bp 60.42 6.27 114.96
SCNpilot_cont_1000_bf_scaffold_35894 3 1351 bp 59.59 3.70 113.69
SCNpilot_cont_1000_bf_scaffold_34084
Species: Hyphomicrobium denitrificans (100%)
3 1405 bp 64.27 3.91 113.59
SCNpilot_cont_1000_bf_scaffold_40263 4 1238 bp 64.05 4.24 113.17
SCNpilot_cont_1000_bf_scaffold_44707 2 1137 bp 51.89 8.58 112.66
SCNpilot_cont_1000_bf_scaffold_35846 3 1352 bp 56.07 5.36 112.50
SCNpilot_cont_1000_bf_scaffold_40819
Species: Advenella kashmirensis (50%)
2 1226 bp 58.24 4.89 112.07
SCNpilot_cont_1000_bf_scaffold_36583 2 1331 bp 57.48 3.76 111.57
SCNpilot_cont_1000_bf_scaffold_32250 4 1465 bp 55.22 3.75 110.99
SCNpilot_cont_1000_bf_scaffold_48762
Species: uncultured marine microorganism HF4000_APKG8C21 (50%)
2 1048 bp 65.46 4.53 109.64
SCNpilot_cont_1000_bf_scaffold_39910
Species: Novosphingobium tardaugens (50%)
2 1247 bp 56.94 4.61 108.98
SCNpilot_cont_1000_bf_scaffold_39416 3 1259 bp 58.22 3.77 108.66
SCNpilot_cont_1000_bf_scaffold_41548 4 1209 bp 59.06 5.17 108.44
SCNpilot_cont_1000_bf_scaffold_21653 4 1976 bp 55.72 3.16 108.40
SCNpilot_cont_1000_bf_scaffold_46223 2 1103 bp 56.94 3.17 108.25
SCNpilot_cont_1000_bf_scaffold_38230 3 1288 bp 59.01 6.02 107.84
SCNpilot_cont_1000_bf_scaffold_26588 3 1691 bp 63.45 5.47 107.51
SCNpilot_cont_1000_bf_scaffold_40114 3 1242 bp 59.74 5.03 107.25
SCNpilot_cont_1000_bf_scaffold_25516
Species: Rubidibacter lacunae (50%)
2 2697 bp 66.41 5.19 107.23
SCNpilot_cont_1000_bf_scaffold_46035 3 1107 bp 57.81 5.65 107.05
SCNpilot_cont_1000_bf_scaffold_25217 4 1762 bp 54.20 5.82 106.92
SCNpilot_cont_1000_bf_scaffold_39884 3 1247 bp 55.25 3.61 106.82
SCNpilot_cont_1000_bf_scaffold_47366
Species: Aureimonas altamirensis (50%)
2 1079 bp 65.52 4.87 106.77
SCNpilot_cont_1000_bf_scaffold_50957 3 1004 bp 59.06 2.99 106.67
SCNpilot_cont_1000_bf_scaffold_37304 3 1312 bp 65.17 4.00 106.56
SCNpilot_cont_1000_bf_scaffold_43852 3 1156 bp 60.38 4.97 106.40
SCNpilot_cont_1000_bf_scaffold_34109 3 1404 bp 60.97 3.92 106.20
SCNpilot_cont_1000_bf_scaffold_26758 3 1684 bp 63.24 4.16 106.18
SCNpilot_cont_1000_bf_scaffold_36699 3 1328 bp 59.64 7.91 106.18
SCNpilot_cont_1000_bf_scaffold_49955 3 1023 bp 56.40 5.38 106.16
SCNpilot_cont_1000_bf_scaffold_40764
Species: Mesorhizobium sp. L48C026A00 (50%)
2 1227 bp 64.79 3.06 106.11
SCNpilot_cont_1000_bf_scaffold_16890
Species: Nitrosospira lacus (50%)
2 2360 bp 54.32 66.84 106.02
SCNpilot_cont_1000_bf_scaffold_32616 2 1453 bp 56.43 4.47 105.92
SCNpilot_cont_1000_bf_scaffold_40258 2 1238 bp 55.82 3.23 105.90
SCNpilot_cont_1000_bf_scaffold_47823
Species: Zootermopsis nevadensis (50%)
2 1069 bp 61.18 5.14 105.80
SCNpilot_cont_1000_bf_scaffold_33245 4 1432 bp 59.43 4.19 105.80
SCNpilot_cont_1000_bf_scaffold_13312 4 2777 bp 59.85 4.23 105.65
SCNpilot_cont_1000_bf_scaffold_46279
Species: Corynebacterium singulare (50%)
2 1102 bp 58.44 2.95 105.63
SCNpilot_cont_1000_bf_scaffold_46936
Species: Singulisphaera acidiphila (50%)
2 1088 bp 62.22 3.68 105.61
SCNpilot_cont_1000_bf_scaffold_38685 3 1276 bp 52.43 6.66 105.56
SCNpilot_cont_1000_bf_scaffold_49819
Species: GWC2_Elusimicrobia_65_9_curated (50%)
2 1026 bp 59.65 5.60 105.56
SCNpilot_cont_1000_bf_scaffold_29031
Species: Sinorhizobium meliloti (50%)
2 2321 bp 62.00 6.89 105.47
SCNpilot_cont_1000_bf_scaffold_30555
Class: Alphaproteobacteria (66.67%)
3 1526 bp 66.58 4.91 105.37
SCNpilot_cont_1000_bf_scaffold_30954 3 1512 bp 59.26 4.96 105.36
SCNpilot_cont_1000_bf_scaffold_47862
Species: Crassostrea gigas (50%)
2 1068 bp 57.68 3.75 105.34
SCNpilot_cont_1000_bf_scaffold_49573
Species: Skermanella stibiiresistens (50%)
2 1031 bp 64.79 20.85 105.34
SCNpilot_cont_1000_bf_scaffold_44218
Species: Hyphomicrobium denitrificans (100%)
2 1148 bp 58.36 3.48 105.31
SCNpilot_cont_1000_bf_scaffold_43940
Order: Rhizobiales (66.67%)
3 1154 bp 65.68 14.51 105.29
Displaying items 1-50 of 26361 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.