ggKbase | organisms

Consensus taxonomy: Alphaproteobacteria → Proteobacteria → Bacteria

Metagenomic Context

Parent: SCNpilot_cont_1000_bf_UNK

Properties

Avg. coverage: 44.11 Longest contig: 21.21 Kbp Bin length: 1.25 Mbp GC content: 61.39 %

Contigs count: 413 Features count: 1549 rRNAs count: 0 tRNAs count: 4

Genome completeness

partial RP 28 / 55 BSCG 27 / 51 ASCG 5 / 38

Displaying items 251-300 of 413 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
SCNpilot_cont_1000_bf_scaffold_27207 Species: Burkholderia gladioli (50%)	2	1665 bp	59.76	27.93	91.17
SCNpilot_cont_1000_bf_scaffold_17098 Species: Parvibaculum lavamentivorans (50%)	2	2338 bp	66.17	51.54	99.70
SCNpilot_cont_1000_bf_scaffold_27212 Species: Hyphomicrobium denitrificans (50%)	2	1664 bp	64.12	47.18	93.57
SCNpilot_cont_1000_bf_scaffold_47131 Species: uncultured bacterium (50%)	2	1083 bp	61.59	51.94	93.63
SCNpilot_cont_1000_bf_scaffold_36838 Species: Oceanibaculum indicum (50%)	2	1325 bp	61.66	46.23	84.00
SCNpilot_cont_1000_bf_scaffold_39989 Species: Phyllobacterium sp. YR531 (50%)	2	1245 bp	62.57	33.33	94.70
SCNpilot_cont_1000_bf_scaffold_35281 Species: Rhodospirillum centenum (50%)	2	1369 bp	60.63	26.11	91.38
SCNpilot_cont_1000_bf_scaffold_34829 Species: Massilia sp. LC238 (50%)	2	1383 bp	60.16	45.01	93.06
SCNpilot_cont_1000_bf_scaffold_51159 Species: alpha proteobacterium MA2 (50%)	2	1000 bp	62.20	46.50	90.60
SCNpilot_cont_1000_bf_scaffold_39745 Species: Maricaulis maris (50%)	2	1250 bp	61.36	38.00	90.48
SCNpilot_cont_1000_bf_scaffold_49330 Species: GWC2_Nitrospirae_42_7_curated (50%)	2	1037 bp	61.91	49.18	95.18
SCNpilot_cont_1000_bf_scaffold_51165 Species: Methylobacterium sp. 4-46 (50%)	2	1000 bp	57.60	51.25	100.20
SCNpilot_cont_1000_bf_scaffold_35807 Species: Acetobacteraceae bacterium AT-5844 (50%)	2	1353 bp	59.35	57.65	97.56
SCNpilot_cont_1000_bf_scaffold_48567 Species: Sphingomonas taxi (50%)	2	1052 bp	56.56	23.76	90.68
SCNpilot_cont_1000_bf_scaffold_45642 Species: Hyphomonas sp. BRH_c22 (50%)	2	1116 bp	61.56	25.76	91.40
SCNpilot_cont_1000_bf_scaffold_50436 Species: Komagataeibacter europaeus (50%)	2	1014 bp	56.90	39.20	87.28
SCNpilot_cont_1000_bf_scaffold_34590 Species: Hydrocarboniphaga effusa (50%)	2	1390 bp	60.65	42.99	97.99
SCNpilot_cont_1000_bf_scaffold_45393 Species: Magnetospirillum magneticum (50%)	2	1122 bp	61.50	30.53	100.00
SCNpilot_cont_1000_bf_scaffold_40891 Species: Oceanibaculum indicum (50%)	2	1224 bp	61.11	54.13	77.70
SCNpilot_cont_1000_bf_scaffold_41571 Species: Microvirga lotononidis (50%)	2	1208 bp	62.09	58.36	86.67
SCNpilot_cont_1000_bf_scaffold_20724 Species: Defluviimonas sp. 20V17 (50%)	2	3425 bp	63.01	26.57	100.20
SCNpilot_cont_1000_bf_scaffold_46627 Species: Devosia chinhatensis (50%)	2	1094 bp	62.61	34.05	91.32
SCNpilot_cont_1000_bf_scaffold_48837 Species: Achromobacter xylosoxidans (50%)	2	1046 bp	55.07	39.67	77.72
SCNpilot_cont_1000_bf_scaffold_28307 Species: R_Sphingopyxis_65_20 (50%)	2	1616 bp	55.63	27.07	95.24
SCNpilot_cont_1000_bf_scaffold_37933 Species: Candidatus Phaeomarinobacter ectocarpi (50%)	2	1296 bp	60.88	50.15	94.68
SCNpilot_cont_1000_bf_scaffold_32040 Species: R_Phenylobacterium_69_31 (50%)	2	1473 bp	66.53	64.32	100.82
SCNpilot_cont_1000_bf_scaffold_27257 Species: R_Gammaproteobacteria_57_10 (50%)	2	1662 bp	62.70	53.70	93.68
SCNpilot_cont_1000_bf_scaffold_28826 Species: alpha proteobacterium MA2 (50%)	2	1594 bp	61.86	55.05	89.96
SCNpilot_cont_1000_bf_scaffold_30595 Species: uncultured bacterium BLR7 (100%)	2	1525 bp	61.84	44.59	99.93
SCNpilot_cont_1000_bf_scaffold_39009 Species: Parvibaculum lavamentivorans (50%)	2	1269 bp	63.51	46.30	95.51
SCNpilot_cont_1000_bf_scaffold_35068 Species: Anaeromyxobacter sp. Fw109-5 (50%)	2	1375 bp	61.60	19.45	84.22
SCNpilot_cont_1000_bf_scaffold_15956 Species: Sphingopyxis sp. LC81 (50%)	2	3324 bp	60.32	30.01	88.36
SCNpilot_cont_1000_bf_scaffold_33208 Species: Asticcacaulis sp. AC466 (50%)	2	1433 bp	63.57	27.91	97.35
SCNpilot_cont_1000_bf_scaffold_43056 Species: Candidatus Phaeomarinobacter ectocarpi (50%)	2	1174 bp	63.54	45.78	87.14
SCNpilot_cont_1000_bf_scaffold_15715 Species: Sphingomonas sp. MM-1 (50%)	2	2480 bp	60.24	44.76	96.29
SCNpilot_cont_1000_bf_scaffold_46915 Species: Desulfotomaculum gibsoniae (50%)	2	1088 bp	59.74	30.56	93.47
SCNpilot_cont_1000_bf_scaffold_29998 Species: Bradyrhizobium elkanii (50%)	2	1548 bp	65.31	51.52	99.81
SCNpilot_cont_1000_bf_scaffold_32319 Species: Candidatus Accumulibacter phosphatis (50%)	2	1463 bp	62.95	37.42	58.65
SCNpilot_cont_1000_bf_scaffold_40671 Species: Rhodospirillum centenum (50%)	2	1229 bp	68.35	37.43	100.08
SCNpilot_cont_1000_bf_scaffold_31511 Species: Microvirga aerilata (50%)	2	1492 bp	61.19	27.65	98.93
SCNpilot_cont_1000_bf_scaffold_43839 Species: BJP_08E140C01_Xanthomonadales_64_42 (50%)	2	1156 bp	61.07	62.07	100.17
SCNpilot_cont_1000_bf_scaffold_44309 Species: Parvibaculum lavamentivorans (50%)	2	1146 bp	65.45	25.96	99.48
SCNpilot_cont_1000_bf_scaffold_39802 Species: Bradyrhizobium elkanii (50%)	2	1249 bp	61.73	42.23	98.96
SCNpilot_cont_1000_bf_scaffold_26309 Species: Nitrospirillum amazonense (50%)	2	1706 bp	58.79	49.38	99.36
SCNpilot_cont_1000_bf_scaffold_40936 Species: Candidatus Phaeomarinobacter ectocarpi (50%)	2	1223 bp	62.22	48.86	83.65
SCNpilot_cont_1000_bf_scaffold_45951 Species: RBG_16_Betaproteobacteria_64_18_curated (50%)	2	1109 bp	58.97	22.77	100.09
SCNpilot_cont_1000_bf_scaffold_43083 Species: Parvibaculum lavamentivorans (50%)	2	1173 bp	64.54	30.48	93.09
SCNpilot_cont_1000_bf_scaffold_33238 Species: Azorhizobium caulinodans (50%)	2	1432 bp	62.29	35.27	88.62
SCNpilot_cont_1000_bf_scaffold_36150 Species: Starkeya novella (50%)	2	1344 bp	64.88	32.37	87.95
SCNpilot_cont_1000_bf_scaffold_42252 Species: Hyphomonadaceae bacterium BRH_c29 (50%)	2	1192 bp	60.07	40.48	82.05

Displaying items 251-300 of 413 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (SCNPILOT_CONT_300_BF_Rhizobiales_62_8) and add all its contigs / scaffolds to the organism you choose below

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Other organism

SCNPILOT_CONT_300_BF_Rhizobiales_62_8

SCNPILOT_CONT_1000_BF_Alphaproteobacteria_61_44

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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