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SCNPILOT_CONT_300_BF_Rhizobiales_62_8

SCNPILOT_CONT_1000_BF_Alphaproteobacteria_61_44
In projects: SCNPILOT_CONT_1000_BF

Consensus taxonomy: Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_cont_1000_bf_UNK

Properties

Avg. coverage: 44.11 Longest contig: 21.21 Kbp Bin length: 1.25 Mbp GC content: 61.39 %
Contigs count: 413 Features count: 1549 rRNAs count: 0 tRNAs count: 4

Genome completeness

partial RP 28 / 55 BSCG 27 / 51 ASCG 5 / 38
Displaying items 251-300 of 413 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_1000_bf_scaffold_21525
Order: Rhizobiales (66.67%)
3 1985 bp 61.61 56.80 90.98
SCNpilot_cont_1000_bf_scaffold_28853
Phylum: Proteobacteria (66.67%)
3 1593 bp 63.40 43.47 90.96
SCNpilot_cont_1000_bf_scaffold_3280
Class: Alphaproteobacteria (71.43%)
7 6470 bp 60.20 48.72 90.93
SCNpilot_cont_1000_bf_scaffold_27324
Class: Alphaproteobacteria (50%)
4 2789 bp 61.78 45.27 90.89
SCNpilot_cont_1000_bf_scaffold_12010
Order: Rhizobiales (50%)
6 4869 bp 61.78 47.29 90.88
SCNpilot_cont_1000_bf_scaffold_12093
Order: Rhizobiales (50%)
6 3876 bp 63.70 47.15 90.87
SCNpilot_cont_1000_bf_scaffold_2998
Class: Alphaproteobacteria (81.82%)
11 12402 bp 61.77 43.88 90.83
SCNpilot_cont_1000_bf_scaffold_8693
Class: Alphaproteobacteria (100%)
7 5879 bp 61.37 46.86 90.83
SCNpilot_cont_1000_bf_scaffold_17909
Class: Alphaproteobacteria (66.67%)
3 2267 bp 62.02 44.33 90.78
SCNpilot_cont_1000_bf_scaffold_46628
Phylum: Proteobacteria (66.67%)
3 1094 bp 63.44 36.11 90.77
SCNpilot_cont_1000_bf_scaffold_13031
Class: Alphaproteobacteria (100%)
3 2817 bp 65.25 50.76 90.73
SCNpilot_cont_1000_bf_scaffold_31133
Species: Parvibaculum lavamentivorans (50%)
2 1505 bp 62.66 58.80 90.70
SCNpilot_cont_1000_bf_scaffold_48567
Species: Sphingomonas taxi (50%)
2 1052 bp 56.56 23.76 90.68
SCNpilot_cont_1000_bf_scaffold_35364
Species: Bradyrhizobium sp. LTSPM299 (50%)
2 1367 bp 61.59 47.73 90.64
SCNpilot_cont_1000_bf_scaffold_51159
Species: alpha proteobacterium MA2 (50%)
2 1000 bp 62.20 46.50 90.60
SCNpilot_cont_1000_bf_scaffold_15225
Phylum: Proteobacteria (62.5%)
8 4484 bp 59.43 53.91 90.59
SCNpilot_cont_1000_bf_scaffold_30178
Order: Caulobacterales (50%)
4 1541 bp 61.52 49.64 90.53
SCNpilot_cont_1000_bf_scaffold_39745
Species: Maricaulis maris (50%)
2 1250 bp 61.36 38.00 90.48
SCNpilot_cont_1000_bf_scaffold_8879
Order: Rhizobiales (50%)
4 3599 bp 63.18 44.32 90.44
SCNpilot_cont_1000_bf_scaffold_32502
Class: Alphaproteobacteria (66.67%)
3 1457 bp 60.60 42.55 90.39
SCNpilot_cont_1000_bf_scaffold_38627
Class: Alphaproteobacteria (66.67%)
3 2038 bp 56.97 31.89 90.38
SCNpilot_cont_1000_bf_scaffold_37835
Class: Alphaproteobacteria (50%)
4 1991 bp 62.13 46.08 90.26
SCNpilot_cont_1000_bf_scaffold_11381
Class: Alphaproteobacteria (83.33%)
6 5619 bp 61.59 50.05 90.23
SCNpilot_cont_1000_bf_scaffold_17334
Class: Alphaproteobacteria (100%)
4 3836 bp 60.56 46.08 90.17
SCNpilot_cont_1000_bf_scaffold_18716
Class: Alphaproteobacteria (66.67%)
3 2197 bp 59.13 51.66 90.12
SCNpilot_cont_1000_bf_scaffold_41391
Species: Bosea sp. LC85 (50%)
2 1212 bp 59.74 20.01 90.10
SCNpilot_cont_1000_bf_scaffold_41418
Species: R_NC10_66_22 (50%)
2 1212 bp 60.40 36.30 90.10
SCNpilot_cont_1000_bf_scaffold_13748
Class: Alphaproteobacteria (50%)
6 2716 bp 63.33 43.08 90.02
SCNpilot_cont_1000_bf_scaffold_28826
Species: alpha proteobacterium MA2 (50%)
2 1594 bp 61.86 55.05 89.96
SCNpilot_cont_1000_bf_scaffold_32086
Species: Rhodovulum sp. NI22 (50%)
2 1471 bp 63.97 49.97 89.94
SCNpilot_cont_1000_bf_scaffold_47218
Species: Chthoniobacter flavus (100%)
1 1082 bp 59.80 29.81 89.83
SCNpilot_cont_1000_bf_scaffold_15433
Phylum: Proteobacteria (50%)
6 3865 bp 60.44 39.26 89.65
SCNpilot_cont_1000_bf_scaffold_27402
Class: Alphaproteobacteria (66.67%)
3 2758 bp 61.89 49.76 89.63
SCNpilot_cont_1000_bf_scaffold_14612
Class: Alphaproteobacteria (60%)
5 4407 bp 61.18 46.40 89.58
SCNpilot_cont_1000_bf_scaffold_8970
Species: Sphingomonas changbaiensis (50%)
2 3578 bp 60.09 46.81 89.55
SCNpilot_cont_1000_bf_scaffold_40086
Class: Alphaproteobacteria (66.67%)
3 1243 bp 59.13 26.15 89.54
SCNpilot_cont_1000_bf_scaffold_37788
Species: Caulobacter vibrioides (50%)
2 1300 bp 63.15 45.00 89.54
SCNpilot_cont_1000_bf_scaffold_3148
Class: Alphaproteobacteria (80%)
20 21147 bp 58.19 39.30 89.52
SCNpilot_cont_1000_bf_scaffold_18467
Species: Rhodoferax ferrireducens (50%)
2 2219 bp 61.24 57.46 89.50
SCNpilot_cont_1000_bf_scaffold_12043
Order: Rhizobiales (66.67%)
6 5235 bp 59.35 40.88 89.40
SCNpilot_cont_1000_bf_scaffold_12352
Order: Rhodospirillales (50%)
6 5762 bp 59.02 36.06 89.34
SCNpilot_cont_1000_bf_scaffold_12366
Order: Rhizobiales (60%)
5 2918 bp 63.98 56.20 89.34
SCNpilot_cont_1000_bf_scaffold_3607
Class: Alphaproteobacteria (84.62%)
13 10426 bp 60.82 44.58 89.29
SCNpilot_cont_1000_bf_scaffold_30948
Species: Parvibaculum lavamentivorans (50%)
2 1512 bp 60.91 40.84 89.29
SCNpilot_cont_1000_bf_scaffold_927
Class: Alphaproteobacteria (57.69%)
26 18935 bp 59.18 26.19 89.02
SCNpilot_cont_1000_bf_scaffold_12082
Order: Caulobacterales (50%)
4 2961 bp 62.21 41.62 88.96
SCNpilot_cont_1000_bf_scaffold_28696
Species: Azoarcus sp. KH32C (50%)
2 1599 bp 66.17 50.97 88.93
SCNpilot_cont_1000_bf_scaffold_6707
Class: Alphaproteobacteria (66.67%)
9 4295 bp 61.44 51.57 88.92
SCNpilot_cont_1000_bf_scaffold_4936
Class: Alphaproteobacteria (71.43%)
7 8184 bp 60.73 50.01 88.89
SCNpilot_cont_1000_bf_scaffold_13205
Phylum: Proteobacteria (71.43%)
7 4949 bp 60.82 46.37 88.87
Displaying items 251-300 of 413 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.