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SCNpilot_cont_1000_p_scaffold_62082_1

Organism: SCNPILOT_EXPT_300_BF_Nitrosospira_56_20

near complete RP 45 / 55 BSCG 47 / 51 MC: 1 ASCG 10 / 38
Location: 2..1195

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Nitrosospira sp. APG3 RepID=M5DPR5_9PROT similarity UNIREF
DB: UNIREF100
  • Identity: 78.5
  • Coverage: 396.0
  • Bit_score: 607
  • Evalue 6.90e-171
  • rbh
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:KIO50376.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 82.2
  • Coverage: 394.0
  • Bit_score: 635
  • Evalue 4.30e-179
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 75.3
  • Coverage: 396.0
  • Bit_score: 584
  • Evalue 2.00e-164
  • rbh

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Taxonomy

Nitrosospira sp. NpAV → Nitrosospira → Nitrosomonadales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1194
TCCGGCATGACGGATGCCAGGGAGGCGATAGATGCCATCTATTGCATGCATTCGCGCCATGTCTTCGCCACCCTCATTCGCCTGCTCGGGGATTTCGATGTGGCGGAAGAGGCGTTGCATGACGCCTTCAGGGCAGCGCTGGAGCAATGGCCGCGCGACGGAGTTCCGGAGAATCCGCGTGCGTGGCTCGTTTCGATCGGGCGCTTCAAGGCTATCGACGGCCTGCGGCGCCGGGCACGATTCCAGCCTTTGCCTGAAGACATCGAAGAGCATCTCGCCGCCGAGGAGGATGACCCGGATGGCGAGGGGGTCGAGGACGACCGCCTCAGGCTTATCTTTACCTGCTGTCATCCCGCTCTCCCTCCCGATGCCCAGGTGGCGCTTACCTTGCGCGAAGTATGCGGGCTGACAACCGAGGAGATCGCCCGGGCATTCCTTACCGCTGCACCCACGCTTGCCCAGCGTATCGTCCGGGCCAAGGCAAAAATCCGGGATGCCCGCATCCCTTACCAGGTGCCTTCGGCGCCTGAACTGCCGGATCGGGTGGAGAGCGTGCTGCGGGTGATTTATCTGGTTTTCAACGAGGGCTATTCGGCATCGTCCGGAGAATCGCTCACGCGCGCCAGCCTTTCCGGCGAGGCGATTCGCCTGGGCAGGCTGCTGGTCGAATTGCTGCCGGAGCCCGAGGCGCTGGGACTGCTTGCGCTGATGCTGCTGCAGGAATCGCGGCACGCGGCGCGCAGTTCCGCGGAAGGCGGTCTCATCCTGCTCGAAGACCAGGACCGCTCGCTCTGGAATGCGGAGCATATTGCCGAAGGGGCGGCGCTGGTGGAGCGGGCATTGCTGTCGCGCCGTTTCGGTTCTTACACCTTGCAGGCGGCGATAGCTGCGGTTCACGCCCATGCCGCCACGGCCTCGGCGACGGACTGGGCGGAGATTGTCGTGATCTACGATATCCTGCTGCGCATCGAGCCATCGCCCGTGGTGGAGTTGAACCGCGCGGTGGCGGTGGCGATGCGGGATGGCCCGGAAGCAGGACTCGATCTCGTGGATGCGATCCTCGCAAGGGGTGAACTCGATGGCTATCATCTGGCGCATTCGGCGCGCGCCGATCTGTGCCGGCGGCTGGGACGAACAACGGAAGCGCGCGCTGCATACAAGCGCGCTTATACGCTCGCCCGGCAGGAGCCGGAG
PROTEIN sequence
Length: 398
SGMTDAREAIDAIYCMHSRHVFATLIRLLGDFDVAEEALHDAFRAALEQWPRDGVPENPRAWLVSIGRFKAIDGLRRRARFQPLPEDIEEHLAAEEDDPDGEGVEDDRLRLIFTCCHPALPPDAQVALTLREVCGLTTEEIARAFLTAAPTLAQRIVRAKAKIRDARIPYQVPSAPELPDRVESVLRVIYLVFNEGYSASSGESLTRASLSGEAIRLGRLLVELLPEPEALGLLALMLLQESRHAARSSAEGGLILLEDQDRSLWNAEHIAEGAALVERALLSRRFGSYTLQAAIAAVHAHAATASATDWAEIVVIYDILLRIEPSPVVELNRAVAVAMRDGPEAGLDLVDAILARGELDGYHLAHSARADLCRRLGRTTEARAAYKRAYTLARQEPE