ggKbase home page
Advanced Search
Search Help

SCNPILOT_EXPT_750_P_Eukaryotic_virus_38_17

SCNPILOT_CONT_1000_P_unknown_38_3
In projects: SCNPILOT_CONT_1000_P  |  phage-plasmid-virus-protein-families

Consensus taxonomy:

Metagenomic Context

Parent: SCNpilot_cont_1000_p_UNK

Properties

Avg. coverage: 2.82 Longest contig: 2.96 Kbp Bin length: 105.68 Kbp GC content: 37.68 %
Contigs count: 76 Features count: 151 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 0 / 55 BSCG 0 / 51 ASCG 1 / 38
Displaying items 1-50 of 76 in total
contig # features sequence size GC content (%) Cov Coding Density (%) notes
SCNpilot_cont_1000_p_scaffold_33889 4 1859 bp 36.58 3.77 93.11
SCNpilot_cont_1000_p_scaffold_23880 4 2401 bp 39.23 1.87 92.96
SCNpilot_cont_1000_p_scaffold_18051
Domain: Bacteria (50%)
4 2961 bp 40.93 3.04 86.42
SCNpilot_cont_1000_p_scaffold_23463 4 2433 bp 37.57 2.67 87.42
SCNpilot_cont_1000_p_scaffold_49360 3 1411 bp 42.31 3.54 101.63
SCNpilot_cont_1000_p_scaffold_61678 3 1201 bp 36.22 1.87 98.92
SCNpilot_cont_1000_p_scaffold_58356 3 1250 bp 39.52 2.80 93.84
SCNpilot_cont_1000_p_scaffold_32401 3 1920 bp 38.23 2.08 80.94
SCNpilot_cont_1000_p_scaffold_44513 3 1523 bp 38.54 2.63 63.03
SCNpilot_cont_1000_p_scaffold_43978 3 1536 bp 36.65 3.09 94.73
SCNpilot_cont_1000_p_scaffold_52593 3 1349 bp 40.70 2.59 97.85
SCNpilot_cont_1000_p_scaffold_19631 3 2774 bp 41.35 3.06 68.46
SCNpilot_cont_1000_p_scaffold_39425 3 1665 bp 35.02 3.90 86.31
SCNpilot_cont_1000_p_scaffold_60582 3 1216 bp 36.76 3.29 93.50
SCNpilot_cont_1000_p_scaffold_37260 3 1736 bp 36.92 3.17 97.81
SCNpilot_cont_1000_p_scaffold_68765 2 1108 bp 37.91 2.93 59.84
SCNpilot_cont_1000_p_scaffold_73123 2 1061 bp 36.57 2.36 79.17
SCNpilot_cont_1000_p_scaffold_33858
Species: Capronia epimyces (50%)
2 1860 bp 39.30 2.69 78.87
SCNpilot_cont_1000_p_scaffold_60679 2 1215 bp 31.28 2.47 96.54
SCNpilot_cont_1000_p_scaffold_66918 2 1130 bp 34.60 2.21 87.08
SCNpilot_cont_1000_p_scaffold_25064
Species: marine sediment metagenome (50%)
2 2318 bp 36.45 3.34 101.21
SCNpilot_cont_1000_p_scaffold_53631 2 1329 bp 38.68 3.76 96.39
SCNpilot_cont_1000_p_scaffold_69339
Species: Phytophthora parasitica (50%)
2 1102 bp 35.75 3.18 90.11
SCNpilot_cont_1000_p_scaffold_68555
Species: Ectocarpus siliculosus virus 1 (50%)
2 1110 bp 37.66 2.70 97.03
SCNpilot_cont_1000_p_scaffold_76258
Species: Rhizophagus irregularis (50%)
2 1028 bp 31.23 2.43 93.09
SCNpilot_cont_1000_p_scaffold_60203 2 1222 bp 34.70 1.84 97.22
SCNpilot_cont_1000_p_scaffold_39050
Species: Thioalkalivibrio nitratireducens (50%)
2 1677 bp 37.87 2.39 100.18
SCNpilot_cont_1000_p_scaffold_63072 2 1181 bp 33.19 2.12 89.42
SCNpilot_cont_1000_p_scaffold_74619
Species: Organic Lake phycodnavirus 2 (50%)
2 1045 bp 37.32 3.35 98.18
SCNpilot_cont_1000_p_scaffold_55792 2 1292 bp 44.66 2.90 80.34
SCNpilot_cont_1000_p_scaffold_41992
Species: Providencia sneebia (50%)
2 1589 bp 30.59 2.99 93.46
SCNpilot_cont_1000_p_scaffold_49932
Species: Candida parapsilosis (50%)
2 1400 bp 38.14 3.21 80.79
SCNpilot_cont_1000_p_scaffold_69374 2 1102 bp 37.84 2.04 96.37
SCNpilot_cont_1000_p_scaffold_49430
Species: Megavirus courdo7 (50%)
2 1410 bp 30.78 2.48 100.21
SCNpilot_cont_1000_p_scaffold_56139
Species: Megavirus chiliensis (50%)
2 1286 bp 35.85 2.72 97.98
SCNpilot_cont_1000_p_scaffold_64804 2 1158 bp 35.66 1.94 95.08
SCNpilot_cont_1000_p_scaffold_56668 2 1277 bp 35.71 3.13 78.94
SCNpilot_cont_1000_p_scaffold_39623
Species: Acanthamoeba polyphaga mimivirus (50%)
2 1659 bp 42.25 3.01 100.18
SCNpilot_cont_1000_p_scaffold_42288 2 1581 bp 35.48 3.16 95.45
SCNpilot_cont_1000_p_scaffold_54635
Species: Gymnopus luxurians (50%)
2 1311 bp 40.43 2.29 83.75
SCNpilot_cont_1000_p_scaffold_78026 2 1011 bp 38.08 4.20 61.72
SCNpilot_cont_1000_p_scaffold_74435 2 1047 bp 40.21 4.06 99.14
SCNpilot_cont_1000_p_scaffold_67225
Species: R_Burkholderiales_69_20 (50%)
2 1126 bp 42.36 4.00 92.45
SCNpilot_cont_1000_p_scaffold_72981
Species: Organic Lake phycodnavirus 2 (50%)
2 1062 bp 31.07 2.35 53.95
SCNpilot_cont_1000_p_scaffold_46703 2 1470 bp 40.00 2.55 98.37
SCNpilot_cont_1000_p_scaffold_41305
Species: marine sediment metagenome (50%)
2 1610 bp 37.33 2.33 94.10
SCNpilot_cont_1000_p_scaffold_72258
Species: Phaeocystis globosa virus (50%)
2 1070 bp 37.48 2.34 97.29
SCNpilot_cont_1000_p_scaffold_55920
Species: R_RIF_OD1_11_46_13 (50%)
2 1289 bp 37.78 1.94 102.40
SCNpilot_cont_1000_p_scaffold_44831
Species: Organic Lake phycodnavirus 2 (50%)
2 1515 bp 38.61 2.31 96.24
SCNpilot_cont_1000_p_scaffold_52396
Species: Megavirus lba (50%)
2 1352 bp 34.69 2.96 52.59
Displaying items 1-50 of 76 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.