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SCNpilot_cont_300_bf_scaffold_319_57

Organism: SCNPILOT_CONT_300_BF_Bacteroidetes_43_15

near complete RP 52 / 55 MC: 1 BSCG 50 / 51 ASCG 13 / 38
Location: comp(68731..69306)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUW3_CHIPD similarity UNIREF
DB: UNIREF100
  • Identity: 46.3
  • Coverage: 188.0
  • Bit_score: 174
  • Evalue 1.20e-40
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 45.7
  • Coverage: 188.0
  • Bit_score: 173
  • Evalue 7.70e-41
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACU62872.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" so similarity UNIPROT
DB: UniProtKB
  • Identity: 45.7
  • Coverage: 188.0
  • Bit_score: 173
  • Evalue 3.80e-40

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Taxonomy

Chitinophaga pinensis → Chitinophaga → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 576
TTGAACCATAAACTACAACACATAACAGAAGCAGGTTTGCTGGCTCTTTATTACAAAGAGCGCGATAATGTGTATGTGGGAGAACTGTTGAGCCGCTATACCTTAAGATTGCTGGGGGTTTGTATGAAATACCTCAAAGATGAAGATGATGCCAGGGATATGGTGCAGCAGGTATTTGAAAAGGTATTGGCAGAGTTGGGGAAATATGAGATCGATAATTTCGGAGGTTGGTTGTACCGCATAGCGCAGAATGCCTGTATCTCCCAGATCAGGGCCCAGAAGCAATTTGTTGCCGAGGAATACCTGGTCTATGTGCCTGCTGATGTGGAGCCGGATACCCGGCAGTTTTGGGAGAAAGAGCAGCAGCATGAACGATTACAGCTCGCCTTGGAACAATTAAAACCCGACCAGAAAATCTGTGTATCTTTGTTTTTTCTTCAGAAAATGAGCTATCAGCAAATCGCTGAAATGCACCAATACGACATTAAAGAAGTAAAAAGCTATATCCAGAACGGGAAACGCAATCTGCGATTGATAATGGAGCAAATGGAACAAGCAGAAAATGTCAGGAAATAA
PROTEIN sequence
Length: 192
LNHKLQHITEAGLLALYYKERDNVYVGELLSRYTLRLLGVCMKYLKDEDDARDMVQQVFEKVLAELGKYEIDNFGGWLYRIAQNACISQIRAQKQFVAEEYLVYVPADVEPDTRQFWEKEQQHERLQLALEQLKPDQKICVSLFFLQKMSYQQIAEMHQYDIKEVKSYIQNGKRNLRLIMEQMEQAENVRK*