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SCNPILOT_CONT_300_BF_Sphingobacteriia_43_4b

SCNPILOT_CONT_300_BF_Sphingobacteriales_44_4
In projects: SCNPILOT_CONT_300_BF

Consensus taxonomy: Sphingobacteriales  →  Sphingobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: SCNpilot_cont_300_bf_UNK

Properties

Avg. coverage: 3.87 Longest contig: 10.93 Kbp Bin length: 2.67 Mbp GC content: 43.60 %
Contigs count: 1231 Features count: 3192 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 35 / 55 MC: 5 BSCG 37 / 51 MC: 6 ASCG 7 / 38

Description

merge? from comparison: SCNPILOT_EXPT_750_BF_Sphingobacteriia_44_15

Displaying items 501-550 of 1231 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_300_bf_scaffold_29877
Species: Niastella koreensis (50%)
2 1713 bp 44.07 3.81 63.40
SCNpilot_cont_300_bf_scaffold_22669
Species: Prevotella sp. CAG:520 (50%)
2 2035 bp 44.13 4.32 98.48
SCNpilot_cont_300_bf_scaffold_20662
Species: Cyclobacterium qasimii (50%)
2 2156 bp 44.71 3.49 98.10
SCNpilot_cont_300_bf_scaffold_24430
Species: Cyclobacterium marinum (50%)
2 1944 bp 38.17 3.49 98.15
SCNpilot_cont_300_bf_scaffold_49318
Species: CG_Ignavi_01 (50%)
2 1214 bp 43.99 3.10 93.66
SCNpilot_cont_300_bf_scaffold_47735
Species: Flavihumibacter petaseus (50%)
2 1244 bp 44.61 3.83 95.02
SCNpilot_cont_300_bf_scaffold_53783
Species: Flavihumibacter sp. ZG627 (50%)
2 1124 bp 44.31 3.13 92.62
SCNpilot_cont_300_bf_scaffold_24433
Species: Niastella koreensis (50%)
2 1944 bp 44.96 3.10 86.27
SCNpilot_cont_300_bf_scaffold_56323
Species: Niabella soli (50%)
2 1067 bp 42.27 3.06 98.41
SCNpilot_cont_300_bf_scaffold_24946
Species: Bacteroides nordii (50%)
2 1918 bp 40.93 3.27 84.78
SCNpilot_cont_300_bf_scaffold_35474
Species: Flavihumibacter solisilvae (50%)
2 1530 bp 44.44 3.45 94.31
SCNpilot_cont_300_bf_scaffold_28596
Species: RBG_16_Caldithrix_48_16_curated (50%)
2 1760 bp 46.36 2.99 97.16
SCNpilot_cont_300_bf_scaffold_54396
Species: Runella slithyformis (50%)
2 1111 bp 45.18 3.61 92.08
SCNpilot_cont_300_bf_scaffold_47229
Species: Cyclobacteriaceae bacterium AK24 (100%)
2 1254 bp 47.93 4.00 82.30
SCNpilot_cont_300_bf_scaffold_58399
Species: GWE2_Bacteroidetes_42_39_curated (50%)
2 1021 bp 45.15 3.20 90.21
SCNpilot_cont_300_bf_scaffold_23974
Species: Niabella soli (50%)
2 1967 bp 41.03 3.83 75.50
SCNpilot_cont_300_bf_scaffold_33215
Species: Flavihumibacter solisilvae (100%)
2 1603 bp 44.73 2.82 98.81
SCNpilot_cont_300_bf_scaffold_41567
Species: Niastella koreensis (50%)
2 1372 bp 44.17 2.74 68.00
SCNpilot_cont_300_bf_scaffold_11528
Species: Dysgonomonas mossii (50%)
2 2990 bp 45.75 3.53 98.23
SCNpilot_cont_300_bf_scaffold_43009
Species: Flavihumibacter petaseus (50%)
2 1339 bp 41.75 3.56 75.95
SCNpilot_cont_300_bf_scaffold_58147
Species: RBG_13_Bacteroidetes_42_15_curated (50%)
2 1027 bp 44.21 2.44 94.35
SCNpilot_cont_300_bf_scaffold_24442
Species: Parabacteroides sp. HGS0025 (50%)
2 1944 bp 46.40 2.84 99.54
SCNpilot_cont_300_bf_scaffold_44642
Species: Flavihumibacter petaseus (50%)
2 1304 bp 42.71 3.08 88.80
SCNpilot_cont_300_bf_scaffold_56332
Species: Pedobacter kyungheensis (50%)
2 1067 bp 46.20 3.76 99.25
SCNpilot_cont_300_bf_scaffold_20931
Species: Chitinophaga pinensis (50%)
2 2140 bp 43.32 3.75 96.73
SCNpilot_cont_300_bf_scaffold_38108
Species: R_Deltaproteobacteria_46_8 (50%)
2 1458 bp 45.27 4.30 92.39
SCNpilot_cont_300_bf_scaffold_48676
Species: Flavihumibacter sp. ZG627 (50%)
2 1226 bp 45.68 2.66 94.94
SCNpilot_cont_300_bf_scaffold_36535
Species: Chryseobacterium sp. P1-3 (50%)
2 1501 bp 36.84 3.68 84.74
SCNpilot_cont_300_bf_scaffold_25568
Species: Niastella koreensis (50%)
2 1887 bp 48.28 3.06 93.96
SCNpilot_cont_300_bf_scaffold_29896
Species: Hassallia byssoidea (50%)
2 1712 bp 48.36 3.52 95.15
SCNpilot_cont_300_bf_scaffold_59178
Species: Flavobacterium sp. CF136 (50%)
2 1004 bp 44.42 2.50 93.53
SCNpilot_cont_300_bf_scaffold_22945
Species: Niastella koreensis (50%)
2 2020 bp 44.65 3.23 81.09
SCNpilot_cont_300_bf_scaffold_40809
Species: Pontibacter sp. BAB1700 (50%)
2 1390 bp 45.90 3.43 96.69
SCNpilot_cont_300_bf_scaffold_37073
Species: Cyclobacteriaceae bacterium AK24 (50%)
2 1487 bp 45.33 3.21 84.33
SCNpilot_cont_300_bf_scaffold_58155
Species: Alistipes indistinctus (50%)
2 1027 bp 41.09 4.40 98.73
SCNpilot_cont_300_bf_scaffold_28354
Species: Bacteroides sp. 3_1_23 (50%)
2 1769 bp 45.96 3.41 95.31
SCNpilot_cont_300_bf_scaffold_54922
Species: Chryseobacterium piperi (50%)
2 1098 bp 45.45 4.11 92.90
SCNpilot_cont_300_bf_scaffold_38883
Species: GWD2_Bacteroidetes_33_33_curated (50%)
2 1438 bp 45.76 3.67 95.34
SCNpilot_cont_300_bf_scaffold_46619
Species: Niabella soli (50%)
2 1265 bp 42.45 3.77 93.91
SCNpilot_cont_300_bf_scaffold_33996
Species: Flavihumibacter solisilvae (50%)
2 1577 bp 45.15 3.50 99.11
SCNpilot_cont_300_bf_scaffold_49852
Species: Flavihumibacter petaseus (50%)
2 1203 bp 40.57 2.50 80.05
SCNpilot_cont_300_bf_scaffold_37077
Species: Pontibacter korlensis (50%)
2 1487 bp 40.69 3.54 57.09
SCNpilot_cont_300_bf_scaffold_57135
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 1049 bp 43.28 3.35 83.22
SCNpilot_cont_300_bf_scaffold_58671
Species: Niabella soli (50%)
2 1015 bp 45.52 3.21 93.99
SCNpilot_cont_300_bf_scaffold_14110
Species: Hassallia byssoidea (50%)
2 2675 bp 45.38 2.53 76.60
SCNpilot_cont_300_bf_scaffold_45526
Species: Pseudopedobacter saltans (50%)
2 1286 bp 41.37 5.66 75.82
SCNpilot_cont_300_bf_scaffold_37079
Species: Niabella soli (50%)
2 1486 bp 45.36 3.72 74.90
SCNpilot_cont_300_bf_scaffold_9984
Species: Pedobacter sp. V48 (50%)
2 3246 bp 44.70 5.03 94.18
SCNpilot_cont_300_bf_scaffold_40816
Species: Pseudopedobacter saltans (100%)
2 2504 bp 44.25 13.83 92.97
SCNpilot_cont_300_bf_scaffold_18960
Species: GWC2_Bacteroidetes_46_850_curated (50%)
2 2270 bp 46.78 3.76 95.15
Displaying items 501-550 of 1231 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.