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SCNPILOT_CONT_300_BF_Sphingobacteriia_43_4b

SCNPILOT_CONT_300_BF_Sphingobacteriales_44_4
In projects: SCNPILOT_CONT_300_BF

Consensus taxonomy: Sphingobacteriales  →  Sphingobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: SCNpilot_cont_300_bf_UNK

Properties

Avg. coverage: 3.87 Longest contig: 10.93 Kbp Bin length: 2.67 Mbp GC content: 43.60 %
Contigs count: 1231 Features count: 3192 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 35 / 55 MC: 5 BSCG 37 / 51 MC: 6 ASCG 7 / 38

Description

merge? from comparison: SCNPILOT_EXPT_750_BF_Sphingobacteriia_44_15

Displaying items 151-200 of 1231 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_300_bf_scaffold_12469
Species: Niastella koreensis (75%)
4 2866 bp 44.42 3.15 97.98
SCNpilot_cont_300_bf_scaffold_9282
Species: Niastella koreensis (50%)
4 3376 bp 40.88 3.79 90.91
SCNpilot_cont_300_bf_scaffold_15891
Species: Niastella koreensis (75%)
4 5202 bp 44.02 4.15 96.89
SCNpilot_cont_300_bf_scaffold_12735
Species: Flavihumibacter solisilvae (50%)
4 2831 bp 45.85 4.34 97.49
SCNpilot_cont_300_bf_scaffold_7216
Order: Flavobacteriales (50%)
4 3899 bp 41.55 5.47 81.56
SCNpilot_cont_300_bf_scaffold_19466
Species: Flavihumibacter petaseus (50%)
4 4210 bp 45.82 3.16 96.34
SCNpilot_cont_300_bf_scaffold_23052
Species: Flavihumibacter solisilvae (75%)
4 2708 bp 40.36 3.15 65.92
SCNpilot_cont_300_bf_scaffold_15146
Order: Sphingobacteriales (50%)
4 2569 bp 43.87 4.10 79.41
SCNpilot_cont_300_bf_scaffold_4666
Order: Sphingobacteriales (75%)
4 5119 bp 43.02 4.07 77.18
SCNpilot_cont_300_bf_scaffold_6526
Species: Flavihumibacter sp. ZG627 (50%)
4 4139 bp 46.77 4.49 86.33
SCNpilot_cont_300_bf_scaffold_4415
Phylum: Bacteroidetes (50%)
4 5300 bp 42.83 3.69 93.28
SCNpilot_cont_300_bf_scaffold_8697
Order: Cytophagales (50%)
4 3503 bp 45.82 4.44 80.93
SCNpilot_cont_300_bf_scaffold_23843
Phylum: Bacteroidetes (75%)
4 1973 bp 46.43 4.33 90.32
SCNpilot_cont_300_bf_scaffold_12262
Phylum: Bacteroidetes (50%)
4 4734 bp 40.94 3.87 55.51
SCNpilot_cont_300_bf_scaffold_10870
Species: Niastella koreensis (50%)
4 3089 bp 43.67 3.25 81.87
SCNpilot_cont_300_bf_scaffold_15166
Species: Niastella koreensis (50%)
4 2567 bp 43.83 4.30 80.05
SCNpilot_cont_300_bf_scaffold_9328
Order: Sphingobacteriales (50%)
4 3368 bp 43.11 4.92 87.29
SCNpilot_cont_300_bf_scaffold_22555
Species: Leadbetterella byssophila (50%)
4 2041 bp 38.76 4.80 86.87
SCNpilot_cont_300_bf_scaffold_12012
Order: Sphingobacteriales (75%)
4 2923 bp 42.25 3.01 73.90
SCNpilot_cont_300_bf_scaffold_15686
Species: Fibrisoma limi (50%)
4 3976 bp 46.38 3.16 76.89
SCNpilot_cont_300_bf_scaffold_17758
Class: Bacteroidia (50%)
4 2358 bp 37.57 3.83 58.52
SCNpilot_cont_300_bf_scaffold_13994
Order: Sphingobacteriales (50%)
4 2688 bp 41.93 2.89 78.46
SCNpilot_cont_300_bf_scaffold_36157 4 2924 bp 41.72 3.61 67.61
SCNpilot_cont_300_bf_scaffold_11670
Species: Niastella koreensis (50%)
4 2969 bp 42.14 3.04 77.40
SCNpilot_cont_300_bf_scaffold_21152
Species: Niastella koreensis (50%)
4 2125 bp 41.84 4.02 68.75
SCNpilot_cont_300_bf_scaffold_20057
Species: Niabella soli (75%)
4 2197 bp 43.88 4.11 75.51
SCNpilot_cont_300_bf_scaffold_10897
Order: Sphingobacteriales (50%)
4 3668 bp 38.63 4.93 65.10
SCNpilot_cont_300_bf_scaffold_45411
Genus: Flavihumibacter (50%)
4 1288 bp 40.22 6.24 84.78
SCNpilot_cont_300_bf_scaffold_4199
Species: Mucilaginibacter paludis (50%)
4 5482 bp 44.86 4.17 97.68
SCNpilot_cont_300_bf_scaffold_16106
Species: Niastella koreensis (50%)
4 2487 bp 45.15 3.53 97.23
SCNpilot_cont_300_bf_scaffold_35395
Phylum: Cyanobacteria (50%)
4 4501 bp 38.92 3.68 45.86
SCNpilot_cont_300_bf_scaffold_10917
Species: Flavihumibacter petaseus (50%)
4 3083 bp 43.95 2.77 83.10
SCNpilot_cont_300_bf_scaffold_13777
Order: Cytophagales (50%)
4 2712 bp 42.37 4.63 73.56
SCNpilot_cont_300_bf_scaffold_9123
Species: Niastella koreensis (50%)
4 5781 bp 43.83 4.17 56.15
SCNpilot_cont_300_bf_scaffold_18868
Order: Sphingobacteriales (50%)
4 2278 bp 40.08 5.18 73.75
SCNpilot_cont_300_bf_scaffold_9894
Class: Flavobacteriia (75%)
4 3263 bp 45.48 3.69 88.45
SCNpilot_cont_300_bf_scaffold_30678
Genus: Flavihumibacter (50%)
4 2456 bp 44.67 4.80 90.39
SCNpilot_cont_300_bf_scaffold_16638
Genus: Flavihumibacter (50%)
4 2444 bp 41.49 4.31 75.98
SCNpilot_cont_300_bf_scaffold_9647
Order: Sphingobacteriales (75%)
4 3308 bp 41.48 3.95 78.36
SCNpilot_cont_300_bf_scaffold_6856
Order: Sphingobacteriales (50%)
4 4019 bp 39.86 3.81 85.32
SCNpilot_cont_300_bf_scaffold_12072
Species: Cyclobacterium qasimii (50%)
4 2916 bp 45.10 3.79 89.81
SCNpilot_cont_300_bf_scaffold_14544
Genus: Flavihumibacter (75%)
4 2628 bp 41.59 3.72 82.99
SCNpilot_cont_300_bf_scaffold_17818
Species: Flavihumibacter solisilvae (50%)
4 5460 bp 46.67 3.17 83.96
SCNpilot_cont_300_bf_scaffold_60561
Order: Cytophagales (75%)
4 1607 bp 41.26 3.12 99.69
SCNpilot_cont_300_bf_scaffold_27387
Species: Flavihumibacter solisilvae (50%)
4 5107 bp 41.16 3.44 50.40
SCNpilot_cont_300_bf_scaffold_19053
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 4126 bp 43.33 3.53 59.84
SCNpilot_cont_300_bf_scaffold_12334
Phylum: Bacteroidetes (50%)
4 2882 bp 35.01 4.01 84.73
SCNpilot_cont_300_bf_scaffold_13289
Species: GWE2_Bacteroidetes_42_39_curated (50%)
4 5277 bp 40.21 4.23 60.03
SCNpilot_cont_300_bf_scaffold_20617
Order: Sphingobacteriales (50%)
4 2158 bp 44.30 3.49 84.11
SCNpilot_cont_300_bf_scaffold_5997
Order: Sphingobacteriales (50%)
4 4361 bp 45.84 4.49 91.91
Displaying items 151-200 of 1231 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.