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SCNPILOT_CONT_300_BF_Rotifera_32_5_partial

SCNPILOT_CONT_300_BF_unknown_33_5
In projects: SCNPILOT_CONT_300_BF

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCNpilot_cont_300_bf_UNK

Properties

Avg. coverage: 4.52 Longest contig: 17.88 Kbp Bin length: 5.19 Mbp GC content: 32.61 %
Contigs count: 803 Features count: 6041 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 6 / 55 MC: 3 BSCG 1 / 51 MC: 1 ASCG 3 / 38

Description

from TS-ESOM (extremely well defined)

Displaying items 201-250 of 803 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_300_bf_scaffold_6002 8 5269 bp 33.46 4.10 40.20
SCNpilot_cont_300_bf_scaffold_13029
Domain: Metazoa (50%)
4 5003 bp 32.86 3.81 40.24
SCNpilot_cont_300_bf_scaffold_6299 8 6081 bp 31.24 3.14 40.26
SCNpilot_cont_300_bf_scaffold_9809 7 6674 bp 33.97 4.02 40.32
SCNpilot_cont_300_bf_scaffold_4401 6 5313 bp 32.90 4.02 40.43
SCNpilot_cont_300_bf_scaffold_4611 7 5155 bp 33.25 4.43 40.45
SCNpilot_cont_300_bf_scaffold_5936 10 6212 bp 31.66 4.20 40.52
SCNpilot_cont_300_bf_scaffold_9634 6 5117 bp 31.78 4.76 40.69
SCNpilot_cont_300_bf_scaffold_16411 10 9047 bp 34.71 3.69 40.72
SCNpilot_cont_300_bf_scaffold_3563 4 6136 bp 31.81 3.64 40.82
SCNpilot_cont_300_bf_scaffold_9969 8 5157 bp 35.06 4.48 40.95
SCNpilot_cont_300_bf_scaffold_22223
Domain: Metazoa (75%)
4 5369 bp 29.50 3.55 40.96
SCNpilot_cont_300_bf_scaffold_4499 6 5237 bp 31.01 3.93 40.96
SCNpilot_cont_300_bf_scaffold_4722 5 5074 bp 34.25 4.35 40.97
SCNpilot_cont_300_bf_scaffold_8649 4 5263 bp 31.45 3.86 40.98
SCNpilot_cont_300_bf_scaffold_4307
Domain: Metazoa (72.73%)
11 6593 bp 33.69 4.57 41.04
SCNpilot_cont_300_bf_scaffold_13084 4 5203 bp 31.87 4.53 41.17
SCNpilot_cont_300_bf_scaffold_6196 8 6704 bp 32.32 3.97 41.26
SCNpilot_cont_300_bf_scaffold_21209
Domain: Metazoa (66.67%)
6 5592 bp 32.24 4.13 41.42
SCNpilot_cont_300_bf_scaffold_9089 9 5258 bp 33.11 4.30 41.42
SCNpilot_cont_300_bf_scaffold_2887
Domain: Metazoa (50%)
10 8766 bp 32.91 3.44 41.44
SCNpilot_cont_300_bf_scaffold_3837 6 5840 bp 33.27 4.25 41.46
SCNpilot_cont_300_bf_scaffold_8915 5 6091 bp 35.91 4.00 41.57
SCNpilot_cont_300_bf_scaffold_5353
Domain: Metazoa (60%)
10 6677 bp 33.50 4.14 41.61
SCNpilot_cont_300_bf_scaffold_5629
Domain: Metazoa (57.14%)
7 6185 bp 33.89 3.94 41.62
SCNpilot_cont_300_bf_scaffold_19426 6 5629 bp 29.90 3.92 41.62
SCNpilot_cont_300_bf_scaffold_7737 3 6167 bp 33.83 4.35 41.64
SCNpilot_cont_300_bf_scaffold_19734 6 5932 bp 32.97 3.77 41.72
SCNpilot_cont_300_bf_scaffold_13247 7 6250 bp 32.02 3.94 41.76
SCNpilot_cont_300_bf_scaffold_6076 4 5657 bp 33.00 3.90 41.79
SCNpilot_cont_300_bf_scaffold_10195 7 8267 bp 33.13 3.43 41.84
SCNpilot_cont_300_bf_scaffold_16531 6 5570 bp 29.61 4.06 41.85
SCNpilot_cont_300_bf_scaffold_5064 7 6410 bp 33.00 4.46 41.89
SCNpilot_cont_300_bf_scaffold_15897 6 5605 bp 33.06 3.63 41.91
SCNpilot_cont_300_bf_scaffold_6980
Domain: Metazoa (50%)
10 7105 bp 31.02 4.10 41.93
SCNpilot_cont_300_bf_scaffold_13846
Domain: Metazoa (60%)
5 6459 bp 35.32 4.20 41.94
SCNpilot_cont_300_bf_scaffold_6133
Domain: Metazoa (50%)
6 6018 bp 31.02 3.92 42.02
SCNpilot_cont_300_bf_scaffold_18011 7 5336 bp 29.52 3.72 42.05
SCNpilot_cont_300_bf_scaffold_5673
Species: Nematostella vectensis (50%)
2 5057 bp 30.91 4.02 42.06
SCNpilot_cont_300_bf_scaffold_4652 6 5128 bp 30.46 4.21 42.06
SCNpilot_cont_300_bf_scaffold_4960 8 9059 bp 32.96 7.70 42.16
SCNpilot_cont_300_bf_scaffold_13393 6 5294 bp 34.11 3.79 42.16
SCNpilot_cont_300_bf_scaffold_7940
Domain: Metazoa (50%)
6 5697 bp 30.70 3.35 42.39
SCNpilot_cont_300_bf_scaffold_8650
Domain: Metazoa (55.56%)
9 6928 bp 31.86 3.59 42.39
SCNpilot_cont_300_bf_scaffold_15305 11 6108 bp 33.10 4.23 42.53
SCNpilot_cont_300_bf_scaffold_16603 7 5286 bp 32.05 3.37 42.57
SCNpilot_cont_300_bf_scaffold_4644 5 5134 bp 30.54 3.91 42.60
SCNpilot_cont_300_bf_scaffold_3108 5 6750 bp 31.20 4.54 42.62
SCNpilot_cont_300_bf_scaffold_12832 7 5498 bp 34.25 3.20 42.67
SCNpilot_cont_300_bf_scaffold_13134 5 5610 bp 32.32 3.85 42.67
Displaying items 201-250 of 803 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.