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SCNPILOT_CONT_300_BF_Rotifera_32_5_partial

SCNPILOT_CONT_300_BF_unknown_33_5
In projects: SCNPILOT_CONT_300_BF

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCNpilot_cont_300_bf_UNK

Properties

Avg. coverage: 4.52 Longest contig: 17.88 Kbp Bin length: 5.19 Mbp GC content: 32.61 %
Contigs count: 803 Features count: 6041 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 6 / 55 MC: 3 BSCG 1 / 51 MC: 1 ASCG 3 / 38

Description

from TS-ESOM (extremely well defined)

Displaying items 251-300 of 803 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_300_bf_scaffold_6477 10 5652 bp 33.72 3.77 60.46
SCNpilot_cont_300_bf_scaffold_9032 5 5588 bp 29.80 3.77 53.31
SCNpilot_cont_300_bf_scaffold_4384 5 5330 bp 31.09 3.77 30.56
SCNpilot_cont_300_bf_scaffold_19734 6 5932 bp 32.97 3.77 41.72
SCNpilot_cont_300_bf_scaffold_6590 5 6925 bp 36.74 3.77 59.91
SCNpilot_cont_300_bf_scaffold_7061
Domain: Bacteria (50%)
6 5330 bp 33.47 3.77 61.52
SCNpilot_cont_300_bf_scaffold_13802 12 6457 bp 34.20 3.77 54.64
SCNpilot_cont_300_bf_scaffold_6876
Domain: Metazoa (55.56%)
9 7980 bp 32.81 3.77 58.42
SCNpilot_cont_300_bf_scaffold_5594 6 5844 bp 34.05 3.78 34.50
SCNpilot_cont_300_bf_scaffold_6749
Domain: Metazoa (50%)
8 5770 bp 31.80 3.78 78.25
SCNpilot_cont_300_bf_scaffold_10574 6 5517 bp 29.87 3.78 88.91
SCNpilot_cont_300_bf_scaffold_3708
Domain: Metazoa (50%)
12 5970 bp 31.68 3.78 56.13
SCNpilot_cont_300_bf_scaffold_9830 5 5249 bp 31.68 3.78 23.49
SCNpilot_cont_300_bf_scaffold_4738 10 6647 bp 33.46 3.78 62.60
SCNpilot_cont_300_bf_scaffold_4764
Species: Adineta vaga (50%)
6 5045 bp 29.26 3.78 68.44
SCNpilot_cont_300_bf_scaffold_3320
Domain: Metazoa (50%)
8 6443 bp 33.99 3.78 54.48
SCNpilot_cont_300_bf_scaffold_19084 6 5177 bp 33.65 3.78 56.73
SCNpilot_cont_300_bf_scaffold_12110 5 5710 bp 30.25 3.78 33.52
SCNpilot_cont_300_bf_scaffold_13393 6 5294 bp 34.11 3.79 42.16
SCNpilot_cont_300_bf_scaffold_5877 12 11454 bp 35.14 3.79 33.84
SCNpilot_cont_300_bf_scaffold_16816 6 5826 bp 34.19 3.79 78.89
SCNpilot_cont_300_bf_scaffold_23076 12 10268 bp 29.97 3.79 62.76
SCNpilot_cont_300_bf_scaffold_3235 5 6561 bp 32.88 3.79 44.44
SCNpilot_cont_300_bf_scaffold_4952 10 7288 bp 34.39 3.79 42.69
SCNpilot_cont_300_bf_scaffold_11496
Domain: Metazoa (57.14%)
7 6424 bp 34.53 3.79 39.04
SCNpilot_cont_300_bf_scaffold_4011 8 6296 bp 32.37 3.79 37.21
SCNpilot_cont_300_bf_scaffold_10232
Domain: Metazoa (60%)
5 5872 bp 34.16 3.80 65.50
SCNpilot_cont_300_bf_scaffold_13957 8 7275 bp 33.07 3.80 69.28
SCNpilot_cont_300_bf_scaffold_5800 9 6255 bp 31.06 3.81 54.24
SCNpilot_cont_300_bf_scaffold_4929 10 7900 bp 33.22 3.81 59.58
SCNpilot_cont_300_bf_scaffold_8755 21 13705 bp 32.38 3.81 53.45
SCNpilot_cont_300_bf_scaffold_13029
Domain: Metazoa (50%)
4 5003 bp 32.86 3.81 40.24
SCNpilot_cont_300_bf_scaffold_13850 6 5066 bp 32.43 3.82 45.48
SCNpilot_cont_300_bf_scaffold_9508 9 5328 bp 29.86 3.82 42.74
SCNpilot_cont_300_bf_scaffold_3185 7 6640 bp 35.42 3.82 49.25
SCNpilot_cont_300_bf_scaffold_7219 5 5842 bp 32.45 3.82 46.94
SCNpilot_cont_300_bf_scaffold_5398 12 10262 bp 32.84 3.82 60.69
SCNpilot_cont_300_bf_scaffold_4431 6 7167 bp 31.56 3.82 45.17
SCNpilot_cont_300_bf_scaffold_11416 9 5120 bp 35.74 3.82 51.80
SCNpilot_cont_300_bf_scaffold_11209
Domain: Metazoa (64.71%)
17 7297 bp 33.79 3.82 67.75
SCNpilot_cont_300_bf_scaffold_15010 7 5658 bp 37.10 3.82 61.19
SCNpilot_cont_300_bf_scaffold_6146 8 8198 bp 29.42 3.83 45.01
SCNpilot_cont_300_bf_scaffold_8355 5 5834 bp 33.24 3.83 27.67
SCNpilot_cont_300_bf_scaffold_12444
Domain: Metazoa (75%)
4 5247 bp 31.28 3.83 14.35
SCNpilot_cont_300_bf_scaffold_5687
Domain: Metazoa (66.67%)
9 5566 bp 31.44 3.83 52.12
SCNpilot_cont_300_bf_scaffold_17359 10 6672 bp 31.44 3.84 80.67
SCNpilot_cont_300_bf_scaffold_3611 4 6085 bp 31.75 3.84 43.09
SCNpilot_cont_300_bf_scaffold_5282 2 6475 bp 32.80 3.84 4.96
SCNpilot_cont_300_bf_scaffold_8838
Phylum: Chordata (50%)
6 6410 bp 34.71 3.84 58.32
SCNpilot_cont_300_bf_scaffold_8129
Domain: Metazoa (75%)
4 6413 bp 33.35 3.84 70.12
Displaying items 251-300 of 803 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.