ggKbase home page

SCNpilot_cont_300_bf_scaffold_4267_curated_10

Organism: scnpilot_dereplicated_Nitrobacter_2

near complete RP 42 / 55 MC: 1 BSCG 42 / 51 MC: 2 ASCG 11 / 38
Location: 9086..9715

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoH n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SPV7_NITWN similarity UNIREF
DB: UNIREF100
  • Identity: 98.6
  • Coverage: 210.0
  • Bit_score: 419
  • Evalue 2.40e-114
RNA polymerase factor sigma-32; K03089 RNA polymerase sigma-32 factor similarity KEGG
DB: KEGG
  • Identity: 98.6
  • Coverage: 210.0
  • Bit_score: 419
  • Evalue 7.60e-115
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 98.6
  • Coverage: 210.0
  • Bit_score: 419
  • Evalue 3.40e-114

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Nitrobacter winogradskyi → Nitrobacter → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 630
ATGGCCCGTACTGCTACCTTGCCGGTTCTCAATGGAGAATCTGGTCTTTCCCGTTATCTCTCCGAAATCCGCAAGTTCCCGATGCTGGAACCGCATGAGGAGTACATGTTCGCCAAGCGGCTGCGCGAACATGACGATCGCGATGCGGCGCATCATCTCGTTACCAGCCATCTGCGGCTCGTGGCCAAGATCGCCATGGGTTATCGCGGCTACGGCCTGCCGATCTCGGAAGTCGTCTCGGAAGGCAACGTCGGCCTGATGCAGGCCGTAAAGAGGTTCGAGCCCGAGAAGGGCTTTCGCCTCGCCACGTACGCCATGTGGTGGATCAAGGCGTCGATACAGGAATACATCCTGCGGTCGTGGTCGCTCGTGAAGATGGGCACCACCGCGAACCAGAAGAAGCTGTTCTTCAACCTGCGCAAGGCGAAGAGCAAGATTTCCGCGCTTGACGAGGGCGATATGCGTCCGGATCAGGTCAAACTCATCGCCAAGCGTCTTGGCGTCACGGAACAGGACGTTGTCGACATGAACCGTCGCCTCGGTGGCGACGCTTCACTCAACGCGCCGATCCGCGACGATGGCGAGGCCGGTGAATGGCAGGACTGGCTGGTCGATCACTCGCCCACCCAG
PROTEIN sequence
Length: 210
MARTATLPVLNGESGLSRYLSEIRKFPMLEPHEEYMFAKRLREHDDRDAAHHLVTSHLRLVAKIAMGYRGYGLPISEVVSEGNVGLMQAVKRFEPEKGFRLATYAMWWIKASIQEYILRSWSLVKMGTTANQKKLFFNLRKAKSKISALDEGDMRPDQVKLIAKRLGVTEQDVVDMNRRLGGDASLNAPIRDDGEAGEWQDWLVDHSPTQ