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SCNpilot_expt_1000_bf_scaffold_1340_curated_35

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: comp(33104..33670)

Top 3 Functional Annotations

Value Algorithm Source
Putative RNA polymerase, sigma-24 subunit, ECF subfamily protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D4F7_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 64.4
  • Coverage: 149.0
  • Bit_score: 190
  • Evalue 2.10e-45
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EDQ33873.1}; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 64.4
  • Coverage: 149.0
  • Bit_score: 190
  • Evalue 3.00e-45
RNA-polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 52.9
  • Coverage: 157.0
  • Bit_score: 157
  • Evalue 4.80e-36

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Taxonomy

Hoeflea phototrophica → Hoeflea → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 567
ATGGTCCTGCCCGGCATCGCTGCCGCCGTCGATGCGCTGATGCGCGCCGATGGCGGCCGGCTGCTCGCCCATCTCGTCGGCGCCGTCAGGGATTTCCAGCTTGCCGAGGACAGTTTGCAGGATGCGCTGGAATCGGCCCTGCATCACTGGTCGCGCAACGGCCTGCCGCGCTCGCCGCCGGCCTGGGTGATGCAGACCGCCCGCCGCAAGGCCATCGACCGGCTGCGGCGCTCCGCCAGTTTCCGCGCCAAATCCGCCGAGATCGCCCATCTGATCGATCTCGATGCCCATGCCGCCGACTGGACCGAGCCGGAGCCGATCGCCGACGAGCGGCTGAAGCTGATCTTCACCTGCTGCCAACCCGCCATCGACCGCAAGACGGCGGTGGCGCTGACGCTGCGCTCCGTCTGCGGCTTGAAGACGGAAGAGGTGGCTGACGCCTTTCTCGACGCCGAACCGGCCATGGCGCAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAGGTGCCGGGGCCGGAACATTGGCCGGCGCGGCTCGAAAGCGTGCTCGCTGTCCTCTATTTGA
PROTEIN sequence
Length: 189
MVLPGIAAAVDALMRADGGRLLAHLVGAVRDFQLAEDSLQDALESALHHWSRNGLPRSPPAWVMQTARRKAIDRLRRSASFRAKSAEIAHLIDLDAHAADWTEPEPIADERLKLIFTCCQPAIDRKTAVALTLRSVCGLKTEEVADAFLDAEPAMAQXXXXXXXXXXMRCRGRNIGRRGSKACSLSSI*