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SCNpilot_expt_1000_bf_scaffold_1601_curated_32

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: comp(23565..24128)

Top 3 Functional Annotations

Value Algorithm Source
rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase; K01790 dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] similarity KEGG
DB: KEGG
  • Identity: 62.0
  • Coverage: 187.0
  • Bit_score: 236
  • Evalue 8.10e-60
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000375DAE7 similarity UNIREF
DB: UNIREF100
  • Identity: 62.6
  • Coverage: 187.0
  • Bit_score: 245
  • Evalue 3.30e-62
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:ACM35448.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 62.0
  • Coverage: 187.0
  • Bit_score: 236
  • Evalue 3.60e-59

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Taxonomy

Agrobacterium vitis → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 564
ATGAGCGGGCGCTTTACGGTTCTGGAAACGCCGATGGCCGATCTGCATCTGGTCGAGCGGCGGCGCCTCGGTGACGAGCGCGGTTTCCTGACCCGCCTGTTCTGCGCCGAGGAACTGGCCGAACTCGGCTTCGACGGTCCGGTCGCGCAGATCAATGAAACTGGCACCGATATCGCTGGCACTGTGCGCGGCATGCATTACCAGCTACCGCCCTTTGCCGAGGTCAAGCTGGTCACCTGCGTCGTCGGTGCAGTGCTTGATGTCGCCATCGACTTGCGCCGCGGCTCGCCGACCTTCCTGCAGCATTTCGCCACCGAGCTTTCGGCCGACAATACCCGCTCGCTGCTGATCCCGCGCGGCTTCGCCCATGGCTTCCAGACGCTGACGCAGGGCGTACGTATGATCTATGCGCATTCCGCACCATACCGCGTCGAGGCCGAGGCCGGACTGAGCGCGCACGATCCCGCGCTCGGGATAGACTGGCCCCTGCCGCCCGTCAATCTCTCGGCCCGCGACCAGAATCATCCGTTCCTCACCAGTCAATTTTCCGGGGTTGTCGTATGA
PROTEIN sequence
Length: 188
MSGRFTVLETPMADLHLVERRRLGDERGFLTRLFCAEELAELGFDGPVAQINETGTDIAGTVRGMHYQLPPFAEVKLVTCVVGAVLDVAIDLRRGSPTFLQHFATELSADNTRSLLIPRGFAHGFQTLTQGVRMIYAHSAPYRVEAEAGLSAHDPALGIDWPLPPVNLSARDQNHPFLTSQFSGVVV*