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SCNpilot_cont_300_bf_scaffold_53_curated_25

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(25172..26038)

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator, AraC family n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V0S7_VARPE similarity UNIREF
DB: UNIREF100
  • Identity: 76.4
  • Coverage: 288.0
  • Bit_score: 438
  • Evalue 5.30e-120
Variovorax paradoxus strain MEDvA23 contig_52, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ27867.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 77.1
  • Coverage: 288.0
  • Bit_score: 441
  • Evalue 8.70e-121
AraC family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 76.4
  • Coverage: 288.0
  • Bit_score: 438
  • Evalue 1.70e-120

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 867
ATGCAGCTGACCCGCCAGCCCGCGGCGCATCTGCAGCCGTTCGTGCGGCTGCTGTGGGCCTCCGCGCCCGAAGGCAGTCGCGTCGCGCGACCCGGGGCGCGCGAGCACGTGCTGCCAACTGGCGGAATGCACCTGGTGTTCCGGCTCTCGGGCCCGCCGCTGAAGCTGTTCGCCGGCGCGAACGATCCACAGGGTGAGACCCACGGCTACGCGATCGTCGGCGGCGCGCGGTCGGCCTTCTACATGCGCGACGTCTCGGTGGCCACGCGGTCCGTCGGCGCGCAGCTCGAGCCGGGCGCTGCGCGCCTCCTGCTGGGTGCCCCCGAAGACGCGCTTGCCGGCCGGCATACGGCGCTCGACGCGCTCTGGGGCGCGCAGCCCACCGCAGACGCGCTCGCGCAGATTCATGCCGCGTACTCCGCCGAACGGCAGCTGGCGGTTTTCGAAGCCCTGCTCACCGGGCGCATCGTTGCATCGCTGAACGCCGGCATGCGAGGGCTTCACCCGGCCATCGCCCAGGCGCTCGGCCCCATCGCTCGAGGGAGCGGCTCGATCGCGGAACTGGTGGAACGCAGCGGCTACAGCCATCGCCGCTTCATCGCCCTCTTTCGCGGTGCGATCGGCCTGACGCCGAAGGAATATGCGCGGGTCATGCGCTTCGATCGCGCGCTGGCTTTGGCAGCCGGAAGCGTACAGGGCTGGGCCGATGTGGCGTCGGCGGCGGGATACAGCGACCAGGCCCACCTGAGCCGCGAGTTTTCGGCGCTGGCGGGCATGCCGCCACAGGCGTGGCGCCGGACGGGAGCGGCGTCGCCACGGCACGTTCCGGCAAGCACAGCCGCGGGTCAAATTCGTTCAAGACGCTAG
PROTEIN sequence
Length: 289
MQLTRQPAAHLQPFVRLLWASAPEGSRVARPGAREHVLPTGGMHLVFRLSGPPLKLFAGANDPQGETHGYAIVGGARSAFYMRDVSVATRSVGAQLEPGAARLLLGAPEDALAGRHTALDALWGAQPTADALAQIHAAYSAERQLAVFEALLTGRIVASLNAGMRGLHPAIAQALGPIARGSGSIAELVERSGYSHRRFIALFRGAIGLTPKEYARVMRFDRALALAAGSVQGWADVASAAGYSDQAHLSREFSALAGMPPQAWRRTGAASPRHVPASTAAGQIRSRR*