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SCNpilot_cont_300_bf_scaffold_57_curated_35

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(32970..33533)

Top 3 Functional Annotations

Value Algorithm Source
Single-stranded DNA-binding protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V3D0_VARPE similarity UNIREF
DB: UNIREF100
  • Identity: 97.4
  • Coverage: 189.0
  • Bit_score: 351
  • Evalue 7.20e-94
single-strand binding protein; K03111 single-strand DNA-binding protein similarity KEGG
DB: KEGG
  • Identity: 97.4
  • Coverage: 189.0
  • Bit_score: 351
  • Evalue 2.30e-94
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.4
  • Coverage: 189.0
  • Bit_score: 351
  • Evalue 1.00e-93

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 564
ATGGCATCGGTCAATAAAGTCATCGTCGTCGGCAACCTGGGGCGCGACCCCGAAATGCGGACCTTCCCGAGCGGCGATCAGGTCGCGAACGTCACAGTGGCCACCACCGATCGCTGGAAAGACAAGCAAAGCGGCGAAATGCGCGAAGCCACCGAGTGGCACCGCATCGTCTTCAACGGCCGCCTGGCCGAAATCGCCGGCCAGTACCTGCGCAAGGGCTCGCAGGTGTACGTCGAAGGCAGCCTGCGCACGCGCAAGTGGACCGACAAGGACGGCATCGAAAAGTACACCACCGAAATCCGCGCCGACCAGATGCAGATGCTCGGCAGCCGTCAGGGCCAGGGCGGCCCGTCGGGCGGTCCCGAGGACGACGGCGGTTACTCGCAAGGCGGCGGTGGCGGCGGCTACTCGCAGGGCGGCAATGGCGGTGGCGGCGGCGGCGGCGGCGGATACGCACCCCGCGCACCCGCGGCGGCACCGCGTGCTCCGGCACCGGCTCCGCGCCAGGCACCGGCCAAGTCGTCGTCGGGCTTCGACGACATGGACGACGATATTCCCTTCTGA
PROTEIN sequence
Length: 188
MASVNKVIVVGNLGRDPEMRTFPSGDQVANVTVATTDRWKDKQSGEMREATEWHRIVFNGRLAEIAGQYLRKGSQVYVEGSLRTRKWTDKDGIEKYTTEIRADQMQMLGSRQGQGGPSGGPEDDGGYSQGGGGGGYSQGGNGGGGGGGGGYAPRAPAAAPRAPAPAPRQAPAKSSSGFDDMDDDIPF*